VTR

7 main matches found (10 matches in total )

Execution time: 13.0 seconds

Match RMSD = 0.47

VTR = 0.01

Average AVD = 0.44 Å

Parameters

Chains(7L2C.pdb ): A versus L

Chains(7L2C_uk_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L2C 1404 3 0 7 0 0 0 10
B7L2C_uk_mut 1398 5 0 7 0 0 0 12

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L G252 S56 G252 S56 Hydrogen Bonds Hydrogen Bonds 0.59 View
A-L A-L G252 S56 G252 S56 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-L A-L G252 S56 G252 S56 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-L A-L T250 S56 T250 S56 Hydrogen Bonds Hydrogen Bonds 0.28 View
A-L A-L D253 S56 D253 S56 Hydrogen Bonds Hydrogen Bonds 0.38 View
A-L A-L P251 L46 P251 L46 Hydrophobic Hydrophobic 0.72 View
A-L A-L D253 S56 D253 S56 Hydrogen Bonds Hydrogen Bonds 0.28 View
A-L A-L P251 P55 P251 P55 Hydrophobic Hydrophobic 0.48 View
A-L A-L P251 L46 P251 L46 Hydrophobic Hydrophobic 0.58 View
A-L A-L T250 S56 T250 S56 Hydrogen Bonds Hydrogen Bonds 0.27 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L2C | 7L2C_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L2C_uk_mut A-L P251 P55 Hydrophobic 4.34 View
7L2C_uk_mut A-L P251 P55 Hydrophobic 4.20 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph