VTR

13 main matches found (37 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.42

VTR = 0.01

Average AVD = 0.39 Å

Parameters

Chains(7L0N.pdb ): S versus M

Chains(7L0N_uk_mut.pdb ) S versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L0N 3304 24 4 9 0 0 0 37
B7L0N_uk_mut 3304 26 4 11 0 0 0 41

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
M-S M-S Y58 F377 Y58 F377 Hydrophobic Hydrophobic 0.75 View
M-S M-S A54 Y369 A54 Y369 Hydrophobic Hydrophobic 0.55 View
M-S M-S D56 Y369 D56 Y369 Hydrophobic Hydrophobic 0.26 View
M-S M-S Y103 L390 Y103 L390 Hydrophobic Hydrophobic 0.43 View
M-S M-S Y103 L390 Y103 L390 Hydrophobic Hydrophobic 0.42 View
M-S M-S Y58 P384 Y58 P384 Hydrophobic Hydrophobic 0.3 View
M-S M-S Y105 K386 Y105 K386 Hydrophobic Hydrophobic 0.48 View
M-S M-S D56 Y369 D56 Y369 Hydrophobic Hydrophobic 0.42 View
M-S M-S Y58 P384 Y58 P384 Hydrophobic Hydrophobic 0.3 View
M-S M-S A54 Y369 A54 Y369 Hydrophobic Hydrophobic 0.6 View
M-S M-S D61 K378 D61 K378 Attractive Attractive 0.19 View
M-S M-S D56 Y369 D56 Y369 Hydrophobic Hydrophobic 0.46 View
M-S M-S T57 N370 T57 N370 Hydrogen Bonds Hydrogen Bonds 0.22 View
M-S M-S Y103 V382 Y103 V382 Hydrophobic Hydrophobic 0.37 View
M-S M-S Y58 P384 Y58 P384 Hydrogen Bonds Hydrogen Bonds 0.23 View
M-S M-S K64 S375 K64 S375 Hydrogen Bonds Hydrogen Bonds 0.58 View
M-S M-S D56 Y369 D56 Y369 Hydrophobic Hydrophobic 0.24 View
M-S M-S T57 N370 T57 N370 Hydrogen Bonds Hydrogen Bonds 0.29 View
M-S M-S D56 Y369 D56 Y369 Hydrogen Bonds Hydrogen Bonds 0.3 View
M-S M-S Y58 P384 Y58 P384 Hydrophobic Hydrophobic 0.22 View
M-S M-S Y103 L390 Y103 L390 Hydrophobic Hydrophobic 0.32 View
M-S M-S Y58 T385 Y58 T385 Hydrophobic Hydrophobic 0.28 View
M-S M-S D33 T385 D33 T385 Hydrogen Bonds Hydrogen Bonds 0.52 View
M-S M-S T57 N370 T57 N370 Hydrogen Bonds Hydrogen Bonds 0.31 View
M-S M-S Y58 T385 Y58 T385 Hydrophobic Hydrophobic 0.28 View
M-S M-S Y58 P384 Y58 P384 Hydrophobic Hydrophobic 0.28 View
M-S M-S D56 Y369 D56 Y369 Hydrophobic Hydrophobic 0.44 View
M-S M-S D33 K386 D33 K386 Attractive Attractive 0.47 View
M-S M-S D56 Y369 D56 Y369 Hydrophobic Hydrophobic 0.49 View
M-S M-S T57 N370 T57 N370 Hydrogen Bonds Hydrogen Bonds 0.31 View
M-S M-S D99 K386 D99 K386 Attractive Attractive 0.29 View
M-S M-S Y103 V382 Y103 V382 Hydrophobic Hydrophobic 0.38 View
M-S M-S Y103 L390 Y103 L390 Hydrophobic Hydrophobic 0.56 View
M-S M-S Y58 F377 Y58 F377 Hydrophobic Hydrophobic 0.81 View
M-S M-S Y58 T385 Y58 T385 Hydrogen Bonds Hydrogen Bonds 0.14 View
M-S M-S D33 K386 D33 K386 Attractive Attractive 0.47 View
M-S M-S T50 T385 T50 T385 Hydrophobic Hydrophobic 0.4 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L0N | 7L0N_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L0N_uk_mut M-S D56 N370 Hydrogen Bonds 3.65 View
7L0N_uk_mut M-S Y58 F377 Hydrophobic 4.36 View
7L0N_uk_mut M-S S100 K386 Hydrogen Bonds 3.65 View
7L0N_uk_mut M-S Y103 L390 Hydrophobic 4.29 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph