VTR

16 main matches found (57 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.35

VTR = 0.01

Average AVD = 0.33 Å

Parameters

Chains(7L0N.pdb ): R versus A

Chains(7L0N_uk_mut.pdb ) R versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L0N 3304 41 2 16 0 0 0 59
B7L0N_uk_mut 3304 47 2 17 0 0 0 66

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-R A-R F106 I358 F106 I358 Hydrophobic Hydrophobic 0.33 View
A-R A-R Y100 N343 Y100 N343 Hydrogen Bonds Hydrogen Bonds 0.45 View
A-R A-R W105 P337 W105 P337 Hydrophobic Hydrophobic 0.27 View
A-R A-R W105 P337 W105 P337 Hydrophobic Hydrophobic 0.29 View
A-R A-R F106 V341 F106 V341 Hydrophobic Hydrophobic 0.12 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.19 View
A-R A-R F106 E340 F106 E340 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-R A-R E108 K356 E108 K356 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.53 View
A-R A-R Y100 N343 Y100 N343 Hydrophobic Hydrophobic 0.54 View
A-R A-R P28 L335 P28 L335 Hydrophobic Hydrophobic 0.15 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.37 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.25 View
A-R A-R W105 P337 W105 P337 Hydrophobic Hydrophobic 0.28 View
A-R A-R I111 N343 I111 N343 Hydrogen Bonds Hydrogen Bonds 0.42 View
A-R A-R W105 L335 W105 L335 Hydrogen Bonds Hydrogen Bonds 0.14 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.39 View
A-R A-R P28 L335 P28 L335 Hydrophobic Hydrophobic 0.5 View
A-R A-R L110 E340 L110 E340 Hydrophobic Hydrophobic 0.22 View
A-R A-R S109 T345 S109 T345 Hydrogen Bonds Hydrogen Bonds 0.19 View
A-R A-R F106 P337 F106 P337 Hydrophobic Hydrophobic 0.53 View
A-R A-R P28 L335 P28 L335 Hydrophobic Hydrophobic 0.46 View
A-R A-R F106 P337 F106 P337 Hydrophobic Hydrophobic 0.32 View
A-R A-R W105 P337 W105 P337 Hydrophobic Hydrophobic 0.28 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.27 View
A-R A-R P28 L335 P28 L335 Hydrophobic Hydrophobic 0.11 View
A-R A-R L110 E340 L110 E340 Hydrophobic Hydrophobic 0.22 View
A-R A-R A104 E340 A104 E340 Hydrogen Bonds Hydrogen Bonds 0.26 View
A-R A-R W105 P337 W105 P337 Hydrophobic Hydrophobic 0.42 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.58 View
A-R A-R W105 P337 W105 P337 Hydrophobic Hydrophobic 0.4 View
A-R A-R T30 T333 T30 T333 Hydrogen Bonds Hydrogen Bonds 0.43 View
A-R A-R W105 P337 W105 P337 Hydrophobic Hydrophobic 0.27 View
A-R A-R Y27 N331 Y27 N331 Hydrogen Bonds Hydrogen Bonds 0.3 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.42 View
A-R A-R F106 E340 F106 E340 Hydrophobic Hydrophobic 0.22 View
A-R A-R F29 N331 F29 N331 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-R A-R W105 C361 W105 C361 Hydrophobic Hydrophobic 0.26 View
A-R A-R F106 P337 F106 P337 Hydrophobic Hydrophobic 0.31 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.38 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.59 View
A-R A-R W105 P337 W105 P337 Hydrophobic Hydrophobic 0.3 View
A-R A-R I111 L441 I111 L441 Hydrophobic Hydrophobic 0.39 View
A-R A-R E108 K356 E108 K356 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.52 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.17 View
A-R A-R W105 C361 W105 C361 Hydrophobic Hydrophobic 0.2 View
A-R A-R W105 E340 W105 E340 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.21 View
A-R A-R T77 N331 T77 N331 Hydrophobic Hydrophobic 0.34 View
A-R A-R W105 E340 W105 E340 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-R A-R W105 P337 W105 P337 Hydrophobic Hydrophobic 0.39 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.4 View
A-R A-R Y100 G339 Y100 G339 Hydrogen Bonds Hydrogen Bonds 0.55 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.56 View
A-R A-R G26 N331 G26 N331 Hydrogen Bonds Hydrogen Bonds 0.22 View
A-R A-R F106 K356 F106 K356 Hydrophobic Hydrophobic 0.24 View
A-R A-R P28 L335 P28 L335 Hydrophobic Hydrophobic 0.24 View
A-R A-R A104 E340 A104 E340 Hydrogen Bonds Hydrogen Bonds 0.33 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L0N | 7L0N_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L0N_uk_mut A-R T30 I332 Hydrogen Bonds 3.83 View
7L0N_uk_mut A-R W105 P337 Hydrophobic 4.41 View
7L0N_uk_mut A-R F106 K356 Hydrophobic 4.49 View
7L0N_uk_mut A-R F106 K356 Hydrophobic 4.24 View
7L0N_uk_mut A-R F106 K356 Hydrophobic 3.75 View
7L0N_uk_mut A-R F106 K356 Hydrophobic 3.73 View
7L0N_uk_mut A-R L110 E340 Hydrophobic 4.24 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph