VTR

17 main matches found (52 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.55

VTR = 0.0

Average AVD = 0.51 Å

Parameters

Chains(7KZB.pdb ): C versus L

Chains(7KZB_uk_mut.pdb ) C versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KZB 992 35 4 13 0 0 2 54
B7KZB_uk_mut 992 37 4 13 0 0 2 56

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-C L-C W92 F377 W92 F377 Aromatic Stacking Aromatic Stacking 0.4 View
L-C L-C Y30 F374 Y30 F374 Hydrophobic Hydrophobic 0.59 View
L-C L-C D31 K378 D31 K378 Attractive Attractive 1.23 View
L-C L-C W92 Y369 W92 Y369 Hydrophobic Hydrophobic 0.33 View
L-C L-C D93 T385 D93 T385 Hydrogen Bonds Hydrogen Bonds 0.74 View
L-C L-C Y30 F377 Y30 F377 Hydrophobic Hydrophobic 0.44 View
L-C L-C Y30 F377 Y30 F377 Hydrophobic Hydrophobic 0.5 View
L-C L-C D93 P384 D93 P384 Hydrophobic Hydrophobic 0.22 View
L-C L-C Y30 S371 Y30 S371 Hydrogen Bonds Hydrogen Bonds 0.68 View
L-C L-C Y30 F377 Y30 F377 Hydrophobic Hydrophobic 0.58 View
L-C L-C W92 F377 W92 F377 Hydrogen Bonds Hydrogen Bonds 0.49 View
L-C L-C W92 P384 W92 P384 Hydrophobic Hydrophobic 0.25 View
L-C L-C D50 K378 D50 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.58 View
L-C L-C D31 S375 D31 S375 Hydrogen Bonds Hydrogen Bonds 0.41 View
L-C L-C Y30 F374 Y30 F374 Hydrophobic Hydrophobic 0.58 View
L-C L-C W92 Y369 W92 Y369 Hydrophobic Hydrophobic 0.39 View
L-C L-C Y30 S371 Y30 S371 Hydrogen Bonds Hydrogen Bonds 0.64 View
L-C L-C W92 Y369 W92 Y369 Hydrophobic Hydrophobic 0.38 View
L-C L-C W92 Y369 W92 Y369 Hydrophobic Hydrophobic 0.29 View
L-C L-C Y30 F377 Y30 F377 Hydrophobic Hydrophobic 0.61 View
L-C L-C Y30 F377 Y30 F377 Hydrophobic Hydrophobic 0.63 View
L-C L-C W92 P384 W92 P384 Hydrophobic Hydrophobic 0.32 View
L-C L-C Y30 F377 Y30 F377 Hydrophobic Hydrophobic 0.46 View
L-C L-C D50 K378 D50 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.57 View
L-C L-C W92 F377 W92 F377 Hydrophobic Hydrophobic 0.36 View
L-C L-C D31 K378 D31 K378 Attractive Attractive 0.87 View
L-C L-C Y28 A372 Y28 A372 Hydrophobic Hydrophobic 0.49 View
L-C L-C Y30 N370 Y30 N370 Hydrogen Bonds Hydrogen Bonds 0.6 View
L-C L-C D31 T376 D31 T376 Hydrogen Bonds Hydrogen Bonds 1.16 View
L-C L-C D93 T385 D93 T385 Hydrogen Bonds Hydrogen Bonds 0.72 View
L-C L-C Y30 F374 Y30 F374 Hydrophobic Hydrophobic 0.55 View
L-C L-C W92 P384 W92 P384 Hydrophobic Hydrophobic 0.29 View
L-C L-C Y30 L368 Y30 L368 Hydrogen Bonds Hydrogen Bonds 0.77 View
L-C L-C W92 P384 W92 P384 Hydrophobic Hydrophobic 0.3 View
L-C L-C W92 P384 W92 P384 Hydrophobic Hydrophobic 0.25 View
L-C L-C Y30 F377 Y30 F377 Hydrophobic Hydrophobic 0.46 View
L-C L-C W92 Y369 W92 Y369 Hydrophobic Hydrophobic 0.34 View
L-C L-C Y30 F377 Y30 F377 Hydrophobic Hydrophobic 0.48 View
L-C L-C Y30 Y369 Y30 Y369 Hydrophobic Hydrophobic 0.41 View
L-C L-C W92 T385 W92 T385 Hydrophobic Hydrophobic 0.47 View
L-C L-C Y30 Y369 Y30 Y369 Hydrogen Bonds Hydrogen Bonds 0.78 View
L-C L-C W92 F377 W92 F377 Hydrophobic Hydrophobic 0.42 View
L-C L-C W92 P384 W92 P384 Hydrophobic Hydrophobic 0.23 View
L-C L-C Y30 F377 Y30 F377 Hydrophobic Hydrophobic 0.53 View
L-C L-C W92 P384 W92 P384 Hydrophobic Hydrophobic 0.31 View
L-C L-C Y30 F377 Y30 F377 Aromatic Stacking Aromatic Stacking 0.61 View
L-C L-C W92 P384 W92 P384 Hydrophobic Hydrophobic 0.3 View
L-C L-C Y30 F374 Y30 F374 Hydrophobic Hydrophobic 0.55 View
L-C L-C W92 Y369 W92 Y369 Hydrophobic Hydrophobic 0.59 View
L-C L-C Y28 A372 Y28 A372 Hydrophobic Hydrophobic 0.34 View
L-C L-C D93 S383 D93 S383 Hydrogen Bonds Hydrogen Bonds 0.63 View
L-C L-C W92 T385 W92 T385 Hydrophobic Hydrophobic 0.46 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KZB | 7KZB_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KZB_uk_mut L-C Y30 F377 Hydrophobic 4.24 View
7KZB_uk_mut L-C W92 F377 Hydrophobic 4.45 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph