VTR

3 main matches found (19 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.68

VTR = 0.01

Average AVD = 0.63 Å

Parameters

Chains(7KZB.pdb ): C versus H

Chains(7KZB_uk_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KZB 992 16 0 2 0 0 1 19
B7KZB_uk_mut 992 18 0 2 0 0 1 21

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-C H-C F105 K378 F105 K378 Hydrophobic Hydrophobic 0.5 View
H-C H-C F105 Y380 F105 Y380 Hydrophobic Hydrophobic 0.48 View
H-C H-C F105 K378 F105 K378 Hydrophobic Hydrophobic 0.55 View
H-C H-C P104 Y380 P104 Y380 Hydrophobic Hydrophobic 0.32 View
H-C H-C F105 Y380 F105 Y380 Hydrophobic Hydrophobic 1.17 View
H-C H-C R52 G381 R52 G381 Hydrogen Bonds Hydrogen Bonds 0.62 View
H-C H-C F105 Y380 F105 Y380 Hydrophobic Hydrophobic 0.49 View
H-C H-C F105 Y380 F105 Y380 Aromatic Stacking Aromatic Stacking 0.44 View
H-C H-C F105 K378 F105 K378 Hydrophobic Hydrophobic 1.23 View
H-C H-C F105 K378 F105 K378 Hydrophobic Hydrophobic 1.15 View
H-C H-C F105 K378 F105 K378 Hydrophobic Hydrophobic 0.5 View
H-C H-C F105 K378 F105 K378 Hydrophobic Hydrophobic 0.57 View
H-C H-C P104 Y380 P104 Y380 Hydrophobic Hydrophobic 0.33 View
H-C H-C F105 K378 F105 K378 Hydrophobic Hydrophobic 0.83 View
H-C H-C A55 D427 A55 D427 Hydrophobic Hydrophobic 0.56 View
H-C H-C F105 Y380 F105 Y380 Hydrophobic Hydrophobic 0.51 View
H-C H-C N56 D427 N56 D427 Hydrogen Bonds Hydrogen Bonds 0.76 View
H-C H-C F105 K378 F105 K378 Hydrophobic Hydrophobic 0.42 View
H-C H-C F105 Y380 F105 Y380 Hydrophobic Hydrophobic 0.52 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KZB | 7KZB_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KZB_uk_mut H-C F105 K378 Hydrophobic 4.02 View
7KZB_uk_mut H-C F105 Y380 Hydrophobic 4.38 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph