VTR

14 main matches found (29 matches in total )

Execution time: 8.0 seconds

Match RMSD = 0.73

VTR = 0.02

Average AVD = 0.62 Å

Parameters

Chains(7KZB.pdb ): C versus B

Chains(7KZB_uk_mut.pdb ) C versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KZB 992 15 0 12 0 0 2 29
B7KZB_uk_mut 992 19 0 16 0 0 2 37

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-B C-B N487 A32 N487 A32 Hydrophobic Hydrophobic 0.24 View
C-B C-B F456 A50 F456 A50 Hydrophobic Hydrophobic 0.48 View
C-B C-B S477 D92 S477 D92 Hydrogen Bonds Hydrogen Bonds 0.43 View
C-B C-B L455 A53 L455 A53 Hydrophobic Hydrophobic 0.5 View
C-B C-B Y489 A50 Y489 A50 Hydrophobic Hydrophobic 0.23 View
C-B C-B Y489 Y49 Y489 Y49 Aromatic Stacking Aromatic Stacking 0.18 View
C-B C-B N487 T91 N487 T91 Hydrogen Bonds Hydrogen Bonds 0.73 View
C-B C-B F456 A50 F456 A50 Hydrophobic Hydrophobic 0.48 View
C-B C-B A475 S31 A475 S31 Hydrogen Bonds Hydrogen Bonds 0.64 View
C-B C-B F486 Y96 F486 Y96 Aromatic Stacking Aromatic Stacking 0.86 View
C-B C-B K417 S52 K417 S52 Hydrogen Bonds Hydrogen Bonds 1.85 View
C-B C-B F456 A53 F456 A53 Hydrophobic Hydrophobic 0.58 View
C-B C-B N487 T91 N487 T91 Hydrogen Bonds Hydrogen Bonds 0.72 View
C-B C-B D405 S60 D405 S60 Hydrogen Bonds Hydrogen Bonds 1.07 View
C-B C-B F486 Y96 F486 Y96 Hydrophobic Hydrophobic 1.06 View
C-B C-B L455 A53 L455 A53 Hydrophobic Hydrophobic 0.39 View
C-B C-B A475 A32 A475 A32 Hydrogen Bonds Hydrogen Bonds 0.4 View
C-B C-B Y489 A50 Y489 A50 Hydrophobic Hydrophobic 0.21 View
C-B C-B S477 D92 S477 D92 Hydrogen Bonds Hydrogen Bonds 0.46 View
C-B C-B Y489 Y49 Y489 Y49 Hydrophobic Hydrophobic 0.24 View
C-B C-B N487 D92 N487 D92 Hydrogen Bonds Hydrogen Bonds 0.39 View
C-B C-B S477 D92 S477 D92 Hydrogen Bonds Hydrogen Bonds 0.48 View
C-B C-B F456 Y49 F456 Y49 Hydrophobic Hydrophobic 0.42 View
C-B C-B Y489 Y49 Y489 Y49 Hydrophobic Hydrophobic 0.26 View
C-B C-B K417 S52 K417 S52 Hydrogen Bonds Hydrogen Bonds 1.32 View
C-B C-B F486 Y96 F486 Y96 Hydrophobic Hydrophobic 1.08 View
C-B C-B S477 S28 S477 S28 Hydrogen Bonds Hydrogen Bonds 0.46 View
C-B C-B F486 Y96 F486 Y96 Hydrophobic Hydrophobic 1.19 View
C-B C-B F456 A53 F456 A53 Hydrophobic Hydrophobic 0.58 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KZB | 7KZB_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KZB_uk_mut C-B L455 A53 Hydrophobic 3.55 View
7KZB_uk_mut C-B F456 Y49 Hydrophobic 4.48 View
7KZB_uk_mut C-B F456 A53 Hydrophobic 4.25 View
7KZB_uk_mut C-B Y473 S31 Hydrogen Bonds 3.85 View
7KZB_uk_mut C-B S477 I29 Hydrogen Bonds 3.68 View
7KZB_uk_mut C-B S477 I29 Hydrogen Bonds 3.67 View
7KZB_uk_mut C-B N487 T91 Hydrogen Bonds 3.71 View
7KZB_uk_mut C-B Y489 Y49 Hydrophobic 4.39 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph