VTR

16 main matches found (25 matches in total )

Execution time: 47.0 seconds

Match RMSD = 0.3

VTR = 0.0

Average AVD = 0.27 Å

Parameters

Chains(7KXK.pdb ): C versus N

Chains(7KXK_uk_mut.pdb ) C versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KXK 4383 9 7 7 0 1 2 26
B7KXK_uk_mut 4383 9 7 8 0 2 2 28

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-N C-N R403 D66 R403 D66 Attractive Attractive 0.27 View
C-N C-N R403 D66 R403 D66 Attractive Attractive 0.27 View
C-N C-N R403 D66 R403 D66 Attractive Attractive 0.24 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.21 View
C-N C-N Y489 H108 Y489 H108 Aromatic Stacking Aromatic Stacking 0.23 View
C-N C-N Y505 L67 Y505 L67 Hydrogen Bonds Hydrogen Bonds 0.6 View
C-N C-N R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.3 View
C-N C-N F486 Y114 F486 Y114 Aromatic Stacking Aromatic Stacking 0.22 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.18 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.14 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.17 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.21 View
C-N C-N Y489 H108 Y489 H108 Hydrogen Bonds Hydrogen Bonds 0.25 View
C-N C-N R403 D66 R403 D66 Attractive Attractive 0.32 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.14 View
C-N C-N Y505 D66 Y505 D66 Hydrogen Bonds Hydrogen Bonds 0.71 View
C-N C-N K417 R80 K417 R80 Repulsive Repulsive 0.24 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.13 View
C-N C-N Y489 H108 Y489 H108 Hydrogen Bonds Hydrogen Bonds 0.39 View
C-N C-N Y489 H108 Y489 H108 Hydrogen Bonds Hydrogen Bonds 0.28 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.14 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.2 View
C-N C-N R403 D66 R403 D66 Attractive Attractive 0.29 View
C-N C-N N487 T109 N487 T109 Hydrogen Bonds Hydrogen Bonds 0.23 View
C-N C-N R403 D66 R403 D66 Attractive Attractive 0.27 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KXK | 7KXK_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KXK_uk_mut C-N D405 D66 Repulsive 5.96 View
7KXK_uk_mut C-N Y505 D66 Hydrogen Bonds 3.58 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph