VTR

20 main matches found (30 matches in total )

Execution time: 97.0 seconds

Match RMSD = 0.45

VTR = 0.0

Average AVD = 0.4 Å

Parameters

Chains(7KXK.pdb ): A versus L

Chains(7KXK_uk_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KXK 4383 10 8 8 0 3 2 31
B7KXK_uk_mut 4383 10 8 9 0 3 2 32

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L R403 Y55 R403 Y55 Hydrogen Bonds Hydrogen Bonds 0.3 View
A-L A-L F456 A38 F456 A38 Hydrophobic Hydrophobic 0.58 View
A-L A-L K458 H108 K458 H108 Repulsive Repulsive 0.49 View
A-L A-L R403 D66 R403 D66 Attractive Attractive 0.32 View
A-L A-L F486 Y114 F486 Y114 Aromatic Stacking Aromatic Stacking 0.23 View
A-L A-L F456 H108 F456 H108 Aromatic Stacking Aromatic Stacking 0.5 View
A-L A-L R403 D66 R403 D66 Attractive Attractive 0.34 View
A-L A-L N487 Y114 N487 Y114 Hydrogen Bonds Hydrogen Bonds 0.46 View
A-L A-L R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.17 View
A-L A-L K417 D66 K417 D66 Attractive Attractive 0.37 View
A-L A-L Y421 S37 Y421 S37 Hydrogen Bonds Hydrogen Bonds 0.47 View
A-L A-L F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.19 View
A-L A-L R403 D66 R403 D66 Attractive Attractive 0.27 View
A-L A-L Y505 S69 Y505 S69 Hydrogen Bonds Hydrogen Bonds 0.9 View
A-L A-L F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.24 View
A-L A-L R403 D66 R403 D66 Attractive Attractive 0.25 View
A-L A-L Y505 Y68 Y505 Y68 Hydrogen Bonds Hydrogen Bonds 0.91 View
A-L A-L E406 D66 E406 D66 Repulsive Repulsive 0.37 View
A-L A-L Y505 L67 Y505 L67 Hydrogen Bonds Hydrogen Bonds 1.02 View
A-L A-L F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.2 View
A-L A-L A475 H108 A475 H108 Hydrogen Bonds Hydrogen Bonds 0.4 View
A-L A-L F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.25 View
A-L A-L R403 D66 R403 D66 Attractive Attractive 0.24 View
A-L A-L E406 D66 E406 D66 Repulsive Repulsive 0.48 View
A-L A-L F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.21 View
A-L A-L F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.24 View
A-L A-L N487 T109 N487 T109 Hydrophobic Hydrophobic 0.46 View
A-L A-L R403 D66 R403 D66 Attractive Attractive 0.42 View
A-L A-L F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.19 View
A-L A-L A475 T109 A475 T109 Hydrophobic Hydrophobic 0.4 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KXK | 7KXK_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KXK_uk_mut A-L Y501 S69 Hydrogen Bonds 2.78 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph