VTR

14 main matches found (38 matches in total )

Execution time: 46.0 seconds

Match RMSD = 0.43

VTR = 0.0

Average AVD = 0.42 Å

Parameters

Chains(7KXJ.pdb ): C versus N

Chains(7KXJ_uk_mut.pdb ) C versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KXJ 4389 24 6 6 0 1 3 40
B7KXJ_uk_mut 4389 24 6 8 0 1 3 42

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-N C-N R403 D66 R403 D66 Attractive Attractive 0.4 View
C-N C-N F456 H108 F456 H108 Hydrophobic Hydrophobic 0.69 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.4 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.43 View
C-N C-N F486 Y114 F486 Y114 Aromatic Stacking Aromatic Stacking 0.36 View
C-N C-N R403 D66 R403 D66 Attractive Attractive 0.52 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.34 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.36 View
C-N C-N R403 D66 R403 D66 Attractive Attractive 0.47 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.39 View
C-N C-N F456 A38 F456 A38 Hydrophobic Hydrophobic 0.49 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.37 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.4 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.38 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.37 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.42 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.31 View
C-N C-N E406 D66 E406 D66 Repulsive Repulsive 0.54 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.34 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.34 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.38 View
C-N C-N K417 D66 K417 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.75 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.33 View
C-N C-N N487 T109 N487 T109 Hydrogen Bonds Hydrogen Bonds 0.29 View
C-N C-N Y505 S69 Y505 S69 Hydrogen Bonds Hydrogen Bonds 0.28 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.42 View
C-N C-N F456 A38 F456 A38 Hydrophobic Hydrophobic 0.45 View
C-N C-N Y473 H108 Y473 H108 Hydrogen Bonds Hydrogen Bonds 0.32 View
C-N C-N R403 D66 R403 D66 Attractive Attractive 0.53 View
C-N C-N Y473 H108 Y473 H108 Aromatic Stacking Aromatic Stacking 0.16 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.36 View
C-N C-N F456 H108 F456 H108 Hydrophobic Hydrophobic 0.43 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.36 View
C-N C-N K417 S65 K417 S65 Hydrogen Bonds Hydrogen Bonds 0.63 View
C-N C-N K417 D66 K417 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.68 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.34 View
C-N C-N F456 H108 F456 H108 Aromatic Stacking Aromatic Stacking 0.34 View
C-N C-N F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.38 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KXJ | 7KXJ_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KXJ_uk_mut C-N N487 T109 Hydrogen Bonds 3.75 View
7KXJ_uk_mut C-N Y505 S69 Hydrogen Bonds 3.73 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph