VTR

6 main matches found (53 matches in total )

Execution time: 42.0 seconds

Match RMSD = 0.36

VTR = 0.01

Average AVD = 0.34 Å

Parameters

Chains(7KXJ.pdb ): C versus J

Chains(7KXJ_uk_mut.pdb ) C versus J

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KXJ 4389 47 0 5 0 0 1 53
B7KXJ_uk_mut 4389 55 0 6 0 0 1 62

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-J C-J F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.38 View
C-J C-J L492 Y109 L492 Y109 Hydrogen Bonds Hydrogen Bonds 0.4 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.37 View
C-J C-J E484 Y110 E484 Y110 Hydrophobic Hydrophobic 0.32 View
C-J C-J F490 Y109 F490 Y109 Hydrogen Bonds Hydrogen Bonds 0.27 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.36 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.29 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.23 View
C-J C-J E484 Y110 E484 Y110 Hydrophobic Hydrophobic 0.31 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.4 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.26 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.35 View
C-J C-J Q493 F113 Q493 F113 Hydrophobic Hydrophobic 0.14 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.46 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.33 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.5 View
C-J C-J Q493 Y109 Q493 Y109 Hydrogen Bonds Hydrogen Bonds 0.19 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.36 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.28 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.52 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.26 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.39 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.37 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.24 View
C-J C-J Y489 Y109 Y489 Y109 Aromatic Stacking Aromatic Stacking 0.25 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.32 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.32 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.36 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.49 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.51 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.23 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.35 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.4 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.27 View
C-J C-J Y489 Y110 Y489 Y110 Hydrophobic Hydrophobic 0.45 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.29 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.34 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.39 View
C-J C-J Y489 Y110 Y489 Y110 Hydrophobic Hydrophobic 0.44 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.48 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.33 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.37 View
C-J C-J Y489 G111 Y489 G111 Hydrogen Bonds Hydrogen Bonds 0.23 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.49 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.29 View
C-J C-J F490 Y109 F490 Y109 Hydrophobic Hydrophobic 0.26 View
C-J C-J Y489 Y110 Y489 Y110 Hydrophobic Hydrophobic 0.45 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.28 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.37 View
C-J C-J Q493 Y109 Q493 Y109 Hydrophobic Hydrophobic 0.3 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.37 View
C-J C-J Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.32 View
C-J C-J E484 Y110 E484 Y110 Hydrogen Bonds Hydrogen Bonds 0.4 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KXJ | 7KXJ_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KXJ_uk_mut C-J G485 Y110 Hydrogen Bonds 3.75 View
7KXJ_uk_mut C-J F486 A64 Hydrophobic 4.40 View
7KXJ_uk_mut C-J F486 Y110 Hydrophobic 4.49 View
7KXJ_uk_mut C-J Y489 Y109 Hydrophobic 4.17 View
7KXJ_uk_mut C-J Y489 Y109 Hydrophobic 4.36 View
7KXJ_uk_mut C-J Y489 Y109 Hydrophobic 4.32 View
7KXJ_uk_mut C-J Y489 Y110 Hydrophobic 4.28 View
7KXJ_uk_mut C-J Q493 Y109 Hydrophobic 4.41 View
7KXJ_uk_mut C-J Q493 Y109 Hydrophobic 4.33 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph