VTR

30 main matches found (36 matches in total )

Execution time: 23.0 seconds

Match RMSD = 0.48

VTR = 0.03

Average AVD = 0.45 Å

Parameters

Chains(7KS9.pdb ): B versus L

Chains(7KS9_uk_mut.pdb ) B versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KS9 3186 6 10 22 0 2 0 40
B7KS9_uk_mut 3185 15 10 21 0 2 1 49

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-B L-B D92 R403 D92 R403 Attractive Attractive 0.33 View
L-B L-B D92 R403 D92 R403 Attractive Attractive 0.42 View
L-B L-B S30 Q498 S30 Q498 Hydrogen Bonds Hydrogen Bonds 0.36 View
L-B L-B D92 R403 D92 R403 Attractive Attractive 0.35 View
L-B L-B D92 R403 D92 R403 Attractive Attractive 0.41 View
L-B L-B N93 R403 N93 R403 Hydrogen Bonds Hydrogen Bonds 0.53 View
L-B L-B I29 Y505 I29 Y505 Hydrophobic Hydrophobic 0.67 View
L-B L-B D92 R403 D92 R403 Attractive Attractive 0.25 View
L-B L-B S30 Q498 S30 Q498 Hydrogen Bonds Hydrogen Bonds 0.25 View
L-B L-B D92 R403 D92 R403 Attractive Attractive 0.25 View
L-B L-B N93 Y505 N93 Y505 Hydrogen Bonds Hydrogen Bonds 0.51 View
L-B L-B Q27 Y505 Q27 Y505 Hydrophobic Hydrophobic 0.58 View
L-B L-B Y91 Q493 Y91 Q493 Hydrogen Bonds Hydrogen Bonds 0.63 View
L-B L-B S30 G496 S30 G496 Hydrogen Bonds Hydrogen Bonds 0.39 View
L-B L-B Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.64 View
L-B L-B D50 Q493 D50 Q493 Hydrogen Bonds Hydrogen Bonds 0.35 View
L-B L-B Y32 Y495 Y32 Y495 Hydrogen Bonds Hydrogen Bonds 0.25 View
L-B L-B D28 N501 D28 Y501 Hydrogen Bonds Hydrogen Bonds 0.59 View
L-B L-B I29 Y505 I29 Y505 Hydrophobic Hydrophobic 0.64 View
L-B L-B D92 R403 D92 R403 Attractive Attractive 0.49 View
L-B L-B D92 R403 D92 R403 Attractive Attractive 0.19 View
L-B L-B D28 T500 D28 T500 Hydrogen Bonds Hydrogen Bonds 0.66 View
L-B L-B Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.65 View
L-B L-B N93 R403 N93 R403 Hydrogen Bonds Hydrogen Bonds 0.39 View
L-B L-B N93 Y505 N93 Y505 Hydrogen Bonds Hydrogen Bonds 0.36 View
L-B L-B D92 K417 D92 K417 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.62 View
L-B L-B D92 E406 D92 E406 Repulsive Repulsive 0.81 View
L-B L-B Y32 Y453 Y32 Y453 Hydrogen Bonds Hydrogen Bonds 0.27 View
L-B L-B Q90 Y505 Q90 Y505 Hydrogen Bonds Hydrogen Bonds 0.43 View
L-B L-B Y91 Y505 Y91 Y505 Hydrogen Bonds Hydrogen Bonds 0.24 View
L-B L-B Q27 Y505 Q27 Y505 Hydrophobic Hydrophobic 0.52 View
L-B L-B Y32 S494 Y32 S494 Hydrogen Bonds Hydrogen Bonds 0.28 View
L-B L-B R66 Q498 R66 Q498 Hydrogen Bonds Hydrogen Bonds 0.39 View
L-B L-B D92 R403 D92 R403 Hydrogen Bonds Hydrogen Bonds 0.43 View
L-B L-B D92 E406 D92 E406 Repulsive Repulsive 0.64 View
L-B L-B D92 K417 D92 K417 Attractive Attractive 0.46 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KS9 | 7KS9_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KS9 L-B Q27 G504 Hydrogen Bonds 3.59 View
7KS9 L-B D28 N501 Hydrogen Bonds 2.96 View
7KS9 L-B D28 G502 Hydrogen Bonds 3.89 View
7KS9_uk_mut L-B Q27 Y501 Hydrophobic 4.24 View
7KS9_uk_mut L-B Q27 Y501 Hydrophobic 4.20 View
7KS9_uk_mut L-B Q27 Y501 Hydrophobic 2.99 View
7KS9_uk_mut L-B Q27 Y501 Hydrogen Bonds 2.98 View
7KS9_uk_mut L-B Q27 Y501 Hydrogen Bonds 3.39 View
7KS9_uk_mut L-B D28 Y501 Hydrophobic 3.64 View
7KS9_uk_mut L-B D28 Y501 Hydrophobic 3.70 View
7KS9_uk_mut L-B D28 Y501 Hydrophobic 2.91 View
7KS9_uk_mut L-B D28 Y501 Hydrophobic 3.79 View
7KS9_uk_mut L-B Y32 Y505 Aromatic Stacking 5.95 View
7KS9_uk_mut L-B Y32 Y505 Hydrophobic 4.30 View
7KS9_uk_mut L-B Y32 Y505 Hydrophobic 4.07 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph