VTR

14 main matches found (21 matches in total )

Execution time: 6.0 seconds

Match RMSD = 1.02

VTR = 0.07

Average AVD = 0.91 Å

Parameters

Chains(7KN7.pdb ): A versus B

Chains(7KN7_uk_mut.pdb ) A versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KN7 727 9 2 13 0 0 1 25
B7KN7_uk_mut 727 10 0 20 0 0 1 31

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-B A-B Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.62 View
A-B A-B Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 1.01 View
A-B A-B P384 Y31 P384 Y31 Hydrophobic Hydrophobic 0.39 View
A-B A-B T376 Q95 T376 Q95 Hydrogen Bonds Hydrogen Bonds 0.54 View
A-B A-B S373 S98 S373 S98 Hydrogen Bonds Hydrogen Bonds 0.98 View
A-B A-B F374 S98 F374 S98 Hydrogen Bonds Hydrogen Bonds 0.84 View
A-B A-B F374 S98 F374 S98 Hydrogen Bonds Hydrogen Bonds 0.78 View
A-B A-B Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 0.94 View
A-B A-B Y369 Y99 Y369 Y99 Aromatic Stacking Aromatic Stacking 1.11 View
A-B A-B S375 G97 S375 G97 Hydrogen Bonds Hydrogen Bonds 0.58 View
A-B A-B S371 Y99 S371 Y99 Hydrogen Bonds Hydrogen Bonds 1.72 View
A-B A-B S371 S98 S371 S98 Hydrogen Bonds Hydrogen Bonds 1.4 View
A-B A-B P384 Y31 P384 Y31 Hydrophobic Hydrophobic 0.27 View
A-B A-B P384 Y31 P384 Y31 Hydrophobic Hydrophobic 0.38 View
A-B A-B F374 S98 F374 S98 Hydrogen Bonds Hydrogen Bonds 0.51 View
A-B A-B Y369 Y99 Y369 Y99 Hydrophobic Hydrophobic 1.1 View
A-B A-B Y369 Y99 Y369 Y99 Hydrogen Bonds Hydrogen Bonds 1.35 View
A-B A-B S375 Q95 S375 Q95 Hydrogen Bonds Hydrogen Bonds 0.62 View
A-B A-B S371 Y100 S371 Y100 Hydrogen Bonds Hydrogen Bonds 1.5 View
A-B A-B F377 S96 F377 S96 Hydrogen Bonds Hydrogen Bonds 0.62 View
A-B A-B A372 Y100 A372 Y100 Hydrophobic Hydrogen Bonds 1.93 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KN7 | 7KN7_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KN7 A-B N370 Y100 Hydrophobic 3.97 View
7KN7 A-B N370 Y100 Hydrogen Bonds 3.81 View
7KN7 A-B R408 D101 Attractive 4.51 View
7KN7 A-B R408 D101 Attractive 5.82 View
7KN7_uk_mut A-B Y369 S98 Hydrogen Bonds 3.12 View
7KN7_uk_mut A-B N370 Y99 Hydrophobic 4.33 View
7KN7_uk_mut A-B N370 Y99 Hydrogen Bonds 2.97 View
7KN7_uk_mut A-B A372 Y100 Hydrophobic 4.45 View
7KN7_uk_mut A-B A372 Y100 Hydrophobic 3.99 View
7KN7_uk_mut A-B F377 S96 Hydrogen Bonds 3.44 View
7KN7_uk_mut A-B F377 G97 Hydrogen Bonds 3.81 View
7KN7_uk_mut A-B K378 Y32 Hydrogen Bonds 3.45 View
7KN7_uk_mut A-B K378 S96 Hydrogen Bonds 3.69 View
7KN7_uk_mut A-B S383 Y31 Hydrogen Bonds 2.61 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph