VTR

2 main matches found (9 matches in total )

Execution time: 5.0 seconds

Match RMSD = 0.43

VTR = 0.03

Average AVD = 0.41 Å

Parameters

Chains(7KN5.pdb ): A versus D

Chains(7KN5_uk_mut.pdb ) A versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KN5 834 7 2 1 0 0 0 10
B7KN5_uk_mut 834 10 2 1 0 0 0 13

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-D A-D D389 K43 D389 K43 Attractive Attractive 0.62 View
A-D A-D L390 K43 L390 K43 Hydrophobic Hydrophobic 0.43 View
A-D A-D F392 P41 F392 P41 Hydrophobic Hydrophobic 0.31 View
A-D A-D T430 P41 T430 P41 Hydrophobic Hydrophobic 0.35 View
A-D A-D L390 K43 L390 K43 Hydrophobic Hydrophobic 0.4 View
A-D A-D T430 P41 T430 P41 Hydrophobic Hydrophobic 0.4 View
A-D A-D C391 G42 C391 G42 Hydrogen Bonds Hydrogen Bonds 0.11 View
A-D A-D L517 P41 L517 P41 Hydrophobic Hydrophobic 0.49 View
A-D A-D V382 P41 V382 P41 Hydrophobic Hydrophobic 0.53 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KN5 | 7KN5_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KN5 A-D K386 E85 Attractive 5.82 View
7KN5_uk_mut A-D D389 K43 Attractive 5.60 View
7KN5_uk_mut A-D L517 P41 Hydrophobic 4.40 View
7KN5_uk_mut A-D L517 P41 Hydrophobic 3.90 View
7KN5_uk_mut A-D L517 P41 Hydrophobic 4.01 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph