VTR

4 main matches found (31 matches in total )

Execution time: 48.0 seconds

Match RMSD = 0.38

VTR = 0.01

Average AVD = 0.36 Å

Parameters

Chains(7KML.pdb ): C versus J

Chains(7KML_uk_mut.pdb ) C versus J

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KML 4413 27 0 2 0 0 2 31
B7KML_uk_mut 4413 33 0 4 0 0 2 39

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-J C-J F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.38 View
C-J C-J F456 F113 F456 F113 Hydrophobic Hydrophobic 0.33 View
C-J C-J F486 A64 F486 A64 Hydrophobic Hydrophobic 0.42 View
C-J C-J F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.38 View
C-J C-J F486 Y57 F486 Y57 Hydrophobic Hydrophobic 0.36 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.23 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.41 View
C-J C-J F486 A64 F486 A64 Hydrophobic Hydrophobic 0.43 View
C-J C-J F486 Y110 F486 Y110 Aromatic Stacking Aromatic Stacking 0.3 View
C-J C-J Y489 Y110 Y489 Y110 Hydrophobic Hydrophobic 0.37 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.36 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.35 View
C-J C-J Y489 Y110 Y489 Y110 Hydrogen Bonds Hydrogen Bonds 0.93 View
C-J C-J F456 F113 F456 F113 Aromatic Stacking Aromatic Stacking 0.33 View
C-J C-J E484 Y110 E484 Y110 Hydrophobic Hydrophobic 0.32 View
C-J C-J F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.27 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.21 View
C-J C-J F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.33 View
C-J C-J F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.45 View
C-J C-J F456 F113 F456 F113 Hydrophobic Hydrophobic 0.32 View
C-J C-J F486 Y57 F486 Y57 Hydrophobic Hydrophobic 0.29 View
C-J C-J F456 F113 F456 F113 Hydrophobic Hydrophobic 0.35 View
C-J C-J F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.31 View
C-J C-J F486 A66 F486 A66 Hydrophobic Hydrophobic 0.22 View
C-J C-J E484 Y110 E484 Y110 Hydrophobic Hydrophobic 0.27 View
C-J C-J F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.44 View
C-J C-J L455 F113 L455 F113 Hydrophobic Hydrophobic 0.41 View
C-J C-J F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.29 View
C-J C-J F456 F113 F456 F113 Hydrophobic Hydrophobic 0.36 View
C-J C-J F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.35 View
C-J C-J Q493 Y109 Q493 Y109 Hydrogen Bonds Hydrogen Bonds 0.4 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KML | 7KML_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KML_uk_mut C-J L455 F113 Hydrophobic 4.33 View
7KML_uk_mut C-J F486 A66 Hydrophobic 4.15 View
7KML_uk_mut C-J F486 A66 Hydrophobic 4.47 View
7KML_uk_mut C-J F486 Y110 Hydrophobic 4.35 View
7KML_uk_mut C-J F486 Y110 Hydrophobic 4.28 View
7KML_uk_mut C-J Y489 Y110 Hydrophobic 4.46 View
7KML_uk_mut C-J Y489 G111 Hydrogen Bonds 3.52 View
7KML_uk_mut C-J Y489 G112 Hydrogen Bonds 3.77 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph