VTR

16 main matches found (18 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.55

VTR = 0.03

Average AVD = 0.51 Å

Parameters

Chains(7KMH.pdb ): C versus B

Chains(7KMH_uk_mut.pdb ) C versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KMH 616 3 9 10 0 0 0 22
B7KMH_uk_mut 616 5 9 11 0 0 0 25

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-C B-C D92 K417 D92 K417 Attractive Attractive 0.61 View
B-C B-C Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.34 View
B-C B-C D92 R403 D92 R403 Attractive Attractive 0.33 View
B-C B-C D92 Y505 D92 Y505 Hydrogen Bonds Hydrogen Bonds 0.42 View
B-C B-C D92 R403 D92 R403 Attractive Attractive 0.31 View
B-C B-C D92 R403 D92 R403 Attractive Attractive 0.3 View
B-C B-C Y32 Y505 Y32 Y505 Hydrophobic Hydrophobic 0.35 View
B-C B-C D92 R403 D92 R403 Attractive Attractive 0.6 View
B-C B-C D92 R403 D92 R403 Hydrogen Bonds Hydrogen Bonds 0.83 View
B-C B-C D92 R403 D92 R403 Attractive Attractive 0.74 View
B-C B-C N93 Y505 N93 Y505 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-C B-C N93 R403 N93 R403 Hydrogen Bonds Hydrogen Bonds 0.32 View
B-C B-C D92 R403 D92 R403 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.45 View
B-C B-C D92 R403 D92 R403 Attractive Attractive 0.58 View
B-C B-C N93 R403 N93 R403 Hydrogen Bonds Hydrogen Bonds 0.44 View
B-C B-C N93 Y505 N93 Y505 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-C B-C Q27 D405 Q27 D405 Hydrogen Bonds Hydrogen Bonds 0.86 View
B-C B-C D92 K417 D92 K417 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.9 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KMH | 7KMH_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KMH B-C D28 G502 Hydrogen Bonds 2.87 View
7KMH B-C D28 Y505 Hydrophobic 4.32 View
7KMH_uk_mut B-C D28 Y501 Hydrophobic 4.38 View
7KMH_uk_mut B-C D28 Y501 Hydrophobic 3.04 View
7KMH_uk_mut B-C D28 Y501 Hydrophobic 2.89 View
7KMH_uk_mut B-C D28 Y501 Hydrogen Bonds 2.93 View
7KMH_uk_mut B-C I29 Y505 Hydrogen Bonds 2.71 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph