VTR

26 main matches found (45 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.52

VTR = 0.01

Average AVD = 0.47 Å

Parameters

Chains(7KFV.pdb ): B versus C

Chains(7KFV_uk_mut.pdb ) B versus C

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KFV 1875 19 2 26 0 0 0 47
B7KFV_uk_mut 1875 20 2 28 0 0 1 51

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-C B-C G416 Y58 G416 Y58 Hydrogen Bonds Hydrogen Bonds 0.25 View
B-C B-C N487 R94 N487 R94 Hydrogen Bonds Hydrogen Bonds 0.34 View
B-C B-C L455 Y100 L455 Y100 Hydrophobic Hydrophobic 0.97 View
B-C B-C L455 Y100 L455 Y100 Hydrophobic Hydrophobic 0.79 View
B-C B-C L455 Y100 L455 Y100 Hydrophobic Hydrophobic 0.62 View
B-C B-C Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.35 View
B-C B-C F456 Y100 F456 Y100 Hydrophobic Hydrophobic 0.54 View
B-C B-C Y489 R94 Y489 R94 Hydrogen Bonds Hydrogen Bonds 0.37 View
B-C B-C K417 Y52 K417 Y52 Hydrogen Bonds Hydrogen Bonds 0.3 View
B-C B-C N460 G54 N460 G54 Hydrogen Bonds Hydrogen Bonds 0.33 View
B-C B-C Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.37 View
B-C B-C R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.19 View
B-C B-C Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.4 View
B-C B-C L455 Y100 L455 Y100 Hydrophobic Hydrophobic 1.14 View
B-C B-C G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.45 View
B-C B-C N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-C B-C L455 Y100 L455 Y100 Hydrophobic Hydrophobic 0.61 View
B-C B-C Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.38 View
B-C B-C Y489 R94 Y489 R94 Hydrogen Bonds Hydrogen Bonds 0.37 View
B-C B-C L455 Y33 L455 Y33 Hydrophobic Hydrophobic 0.35 View
B-C B-C L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.25 View
B-C B-C K417 D96 K417 D96 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.59 View
B-C B-C K417 Y52 K417 Y52 Hydrophobic Hydrophobic 0.45 View
B-C B-C F486 V2 F486 V2 Hydrophobic Hydrophobic 0.53 View
B-C B-C K458 G54 K458 G54 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-C B-C F486 Y102 F486 Y102 Hydrophobic Hydrophobic 0.93 View
B-C B-C F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.26 View
B-C B-C Y489 R94 Y489 R94 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-C B-C Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 0.66 View
B-C B-C F456 Y100 F456 Y100 Hydrophobic Hydrophobic 0.56 View
B-C B-C F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.27 View
B-C B-C N487 R94 N487 R94 Hydrogen Bonds Hydrogen Bonds 0.35 View
B-C B-C T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.25 View
B-C B-C A475 N32 A475 N32 Hydrogen Bonds Hydrogen Bonds 0.66 View
B-C B-C F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.28 View
B-C B-C A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.66 View
B-C B-C L455 Y33 L455 Y33 Hydrophobic Hydrophobic 0.34 View
B-C B-C L455 Y100 L455 Y100 Hydrophobic Hydrophobic 0.97 View
B-C B-C T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.24 View
B-C B-C F486 V2 F486 V2 Hydrophobic Hydrophobic 0.49 View
B-C B-C K417 S98 K417 S98 Hydrogen Bonds Hydrogen Bonds 0.68 View
B-C B-C S477 T28 S477 T28 Hydrogen Bonds Hydrogen Bonds 0.37 View
B-C B-C Y473 S53 Y473 S53 Hydrogen Bonds Hydrogen Bonds 0.31 View
B-C B-C F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.26 View
B-C B-C K417 D96 K417 D96 Attractive Attractive 0.5 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KFV | 7KFV_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KFV B-C Y453 G99 Hydrogen Bonds 2.66 View
7KFV_uk_mut B-C Y421 Y52 Hydrophobic 4.18 View
7KFV_uk_mut B-C F456 Y100 Aromatic Stacking 5.98 View
7KFV_uk_mut B-C K458 S53 Hydrogen Bonds 3.48 View
7KFV_uk_mut B-C A475 T28 Hydrogen Bonds 3.38 View
7KFV_uk_mut B-C A475 S31 Hydrogen Bonds 3.79 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph