VTR

7 main matches found (16 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.45

VTR = 0.02

Average AVD = 0.41 Å

Parameters

Chains(7K9Z.pdb ): E versus A

Chains(7K9Z_uk_mut.pdb ) E versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K9Z 1041 9 0 7 0 0 0 16
B7K9Z_uk_mut 1041 10 0 10 0 0 0 20

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-E A-E P96 F486 P96 F486 Hydrophobic Hydrophobic 0.38 View
A-E A-E T94 T478 T94 T478 Hydrogen Bonds Hydrogen Bonds 0.24 View
A-E A-E Y92 S477 Y92 S477 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-E A-E P96 F486 P96 F486 Hydrophobic Hydrophobic 0.42 View
A-E A-E P96 F486 P96 F486 Hydrophobic Hydrophobic 0.25 View
A-E A-E Y91 N487 Y91 N487 Hydrogen Bonds Hydrogen Bonds 0.81 View
A-E A-E Y92 N487 Y92 N487 Hydrogen Bonds Hydrogen Bonds 0.47 View
A-E A-E T94 F486 T94 F486 Hydrophobic Hydrophobic 0.48 View
A-E A-E P96 F486 P96 F486 Hydrophobic Hydrophobic 0.3 View
A-E A-E T94 F486 T94 F486 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-E A-E Y92 S477 Y92 S477 Hydrogen Bonds Hydrogen Bonds 0.51 View
A-E A-E Y91 F486 Y91 F486 Hydrophobic Hydrophobic 0.4 View
A-E A-E P96 F486 P96 F486 Hydrophobic Hydrophobic 0.17 View
A-E A-E P96 F486 P96 F486 Hydrophobic Hydrophobic 0.37 View
A-E A-E Y91 F486 Y91 F486 Hydrophobic Hydrophobic 0.52 View
A-E A-E Y32 A475 Y32 A475 Hydrogen Bonds Hydrogen Bonds 0.73 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K9Z | 7K9Z_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K9Z_uk_mut A-E Y92 S477 Hydrogen Bonds 3.77 View
7K9Z_uk_mut A-E S93 S477 Hydrogen Bonds 3.79 View
7K9Z_uk_mut A-E T94 F486 Hydrophobic 4.49 View
7K9Z_uk_mut A-E T94 N487 Hydrogen Bonds 3.80 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph