VTR

10 main matches found (43 matches in total )

Execution time: 28.0 seconds

Match RMSD = 0.6

VTR = 0.03

Average AVD = 0.54 Å

Parameters

Chains(7K8Y.pdb ): B versus G

Chains(7K8Y_uk_mut.pdb ) B versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8Y 3238 34 0 9 0 0 1 44
B7K8Y_uk_mut 3235 46 0 10 0 0 1 57

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.54 View
B-G B-G F456 V106 F456 V106 Hydrophobic Hydrophobic 0.63 View
B-G B-G F456 V106 F456 V106 Hydrophobic Hydrophobic 1.01 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.4 View
B-G B-G Y489 L107 Y489 L107 Hydrophobic Hydrophobic 1.8 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.52 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.4 View
B-G B-G Y449 T28 Y449 T28 Hydrophobic Hydrophobic 0.54 View
B-G B-G Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.43 View
B-G B-G Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.45 View
B-G B-G Y489 L107 Y489 L107 Hydrophobic Hydrophobic 0.84 View
B-G B-G F456 V106 F456 V106 Hydrophobic Hydrophobic 0.78 View
B-G B-G Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.41 View
B-G B-G Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.45 View
B-G B-G E484 Y33 E484 Y33 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-G B-G Y449 F29 Y449 F29 Hydrogen Bonds Hydrogen Bonds 0.4 View
B-G B-G F456 V106 F456 V106 Hydrophobic Hydrophobic 0.88 View
B-G B-G Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.48 View
B-G B-G E484 T58 E484 T58 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.41 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.5 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.39 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.37 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.28 View
B-G B-G Q498 Y27 Q498 Y27 Hydrogen Bonds Hydrogen Bonds 0.25 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.27 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.32 View
B-G B-G Y489 L107 Y489 L107 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.42 View
B-G B-G F486 Y113 F486 Y113 Aromatic Stacking Aromatic Stacking 0.39 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.49 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.39 View
B-G B-G F486 Y113 F486 Y113 Hydrophobic Hydrophobic 0.44 View
B-G B-G F456 V106 F456 V106 Hydrophobic Hydrophobic 0.84 View
B-G B-G E484 Y33 E484 Y33 Hydrogen Bonds Hydrogen Bonds 0.82 View
B-G B-G Y489 V106 Y489 V106 Hydrogen Bonds Hydrogen Bonds 0.88 View
B-G B-G Y449 Y27 Y449 Y27 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-G B-G Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.41 View
B-G B-G Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.5 View
B-G B-G S494 T30 S494 T30 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-G B-G Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.39 View
B-G B-G A475 L107 A475 L107 Hydrophobic Hydrophobic 0.61 View
B-G B-G Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.48 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8Y | 7K8Y_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8Y B-G F486 L107 Hydrophobic 4.49 View
7K8Y_uk_mut B-G Y449 F29 Hydrophobic 4.33 View
7K8Y_uk_mut B-G F456 V106 Hydrophobic 4.39 View
7K8Y_uk_mut B-G F456 V106 Hydrophobic 3.69 View
7K8Y_uk_mut B-G F486 Y113 Hydrogen Bonds 3.88 View
7K8Y_uk_mut B-G F486 Y113 Hydrophobic 4.25 View
7K8Y_uk_mut B-G F486 Y113 Hydrophobic 4.41 View
7K8Y_uk_mut B-G F486 Y113 Hydrophobic 3.88 View
7K8Y_uk_mut B-G F486 Y113 Hydrophobic 4.30 View
7K8Y_uk_mut B-G F486 Y113 Hydrophobic 3.70 View
7K8Y_uk_mut B-G F486 Y113 Hydrophobic 4.47 View
7K8Y_uk_mut B-G Y489 V106 Hydrophobic 4.21 View
7K8Y_uk_mut B-G Y489 V106 Hydrophobic 3.65 View
7K8Y_uk_mut B-G Y489 V106 Hydrophobic 4.39 View
7K8Y_uk_mut B-G Y489 V106 Hydrophobic 3.46 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph