VTR

3 main matches found (24 matches in total )

Execution time: 27.0 seconds

Match RMSD = 0.71

VTR = 0.04

Average AVD = 0.67 Å

Parameters

Chains(7K8T.pdb ): C versus H

Chains(7K8T_uk_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8T 3666 21 0 5 0 0 0 26
B7K8T_uk_mut 3663 29 0 6 0 0 0 35

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H F490 R97 F490 R97 Hydrogen Bonds Hydrogen Bonds 1.16 View
C-H C-H Y449 V2 Y449 V2 Hydrophobic Hydrophobic 0.51 View
C-H C-H N481 N56 N481 N56 Hydrogen Bonds Hydrogen Bonds 0.45 View
C-H C-H V483 V50 V483 V50 Hydrophobic Hydrophobic 0.56 View
C-H C-H Y449 F27 Y449 F27 Hydrophobic Hydrophobic 0.41 View
C-H C-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.82 View
C-H C-H F490 R97 F490 R97 Hydrogen Bonds Hydrogen Bonds 0.37 View
C-H C-H L492 I31 L492 I31 Hydrophobic Hydrophobic 0.67 View
C-H C-H Q493 R97 Q493 R97 Hydrophobic Hydrophobic 0.6 View
C-H C-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.85 View
C-H C-H L452 T28 L452 T28 Hydrophobic Hydrophobic 0.4 View
C-H C-H L492 I31 L492 I31 Hydrophobic Hydrophobic 0.69 View
C-H C-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.84 View
C-H C-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.71 View
C-H C-H L492 I31 L492 I31 Hydrophobic Hydrophobic 0.65 View
C-H C-H V483 V50 V483 V50 Hydrophobic Hydrophobic 0.36 View
C-H C-H V483 V50 V483 V50 Hydrophobic Hydrophobic 0.41 View
C-H C-H F490 I31 F490 I31 Hydrophobic Hydrophobic 1.14 View
C-H C-H F490 I31 F490 I31 Hydrophobic Hydrophobic 1.12 View
C-H C-H V483 Y58 V483 Y58 Hydrophobic Hydrophobic 0.91 View
C-H C-H V483 V50 V483 V50 Hydrophobic Hydrophobic 0.49 View
C-H C-H T470 I31 T470 I31 Hydrophobic Hydrophobic 0.64 View
C-H C-H Y449 V2 Y449 V2 Hydrophobic Hydrophobic 0.58 View
C-H C-H F490 I31 F490 I31 Hydrophobic Hydrophobic 0.83 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8T | 7K8T_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8T C-H Y489 R97 Hydrogen Bonds 3.76 View
7K8T C-H Q493 R97 Hydrogen Bonds 3.47 View
7K8T_uk_mut C-H Y449 V2 Hydrophobic 4.26 View
7K8T_uk_mut C-H Y449 F27 Hydrophobic 4.13 View
7K8T_uk_mut C-H N481 N56 Hydrogen Bonds 3.17 View
7K8T_uk_mut C-H V483 Y58 Hydrophobic 4.48 View
7K8T_uk_mut C-H V483 Y58 Hydrophobic 4.36 View
7K8T_uk_mut C-H V483 Y58 Hydrophobic 3.60 View
7K8T_uk_mut C-H V483 Y58 Hydrophobic 3.63 View
7K8T_uk_mut C-H F490 I31 Hydrophobic 4.16 View
7K8T_uk_mut C-H F490 R97 Hydrogen Bonds 3.80 View
7K8T_uk_mut C-H Q493 R97 Hydrophobic 4.35 View
7K8T_uk_mut C-H S494 Y32 Hydrogen Bonds 3.60 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph