VTR

5 main matches found (10 matches in total )

Execution time: 25.0 seconds

Match RMSD = 0.69

VTR = 0.03

Average AVD = 0.66 Å

Parameters

Chains(7K8T.pdb ): B versus M

Chains(7K8T_uk_mut.pdb ) B versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K8T 3666 5 0 7 0 0 0 12
B7K8T_uk_mut 3663 5 0 7 0 0 0 12

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-M B-M N481 N56 N481 N56 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-M B-M N481 N56 N481 N56 Hydrophobic Hydrophobic 0.35 View
B-M B-M F490 I31 F490 I31 Hydrophobic Hydrophobic 0.73 View
B-M B-M S494 Y32 S494 Y32 Hydrogen Bonds Hydrogen Bonds 0.87 View
B-M B-M N481 N56 N481 N56 Hydrogen Bonds Hydrogen Bonds 0.63 View
B-M B-M L492 R97 L492 R97 Hydrogen Bonds Hydrogen Bonds 0.95 View
B-M B-M L452 I31 L452 I31 Hydrophobic Hydrophobic 0.65 View
B-M B-M L452 I31 L452 I31 Hydrophobic Hydrophobic 0.81 View
B-M B-M L452 I31 L452 I31 Hydrophobic Hydrophobic 0.8 View
B-M B-M N481 Y58 N481 Y58 Hydrogen Bonds Hydrogen Bonds 0.3 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K8T | 7K8T_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K8T B-M Y453 S99 Hydrogen Bonds 3.40 View
7K8T B-M S494 S99 Hydrogen Bonds 3.79 View
7K8T_uk_mut B-M Y449 S99 Hydrogen Bonds 3.55 View
7K8T_uk_mut B-M S494 S99 Hydrogen Bonds 3.65 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph