VTR

3 main matches found (14 matches in total )

Execution time: 4.0 seconds

Match RMSD = 0.28

VTR = 0.0

Average AVD = 0.27 Å

Parameters

Chains(7K45.pdb ): B versus L

Chains(7K45_uk_mut.pdb ) B versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7K45 418 11 0 2 0 0 1 14
B7K45_uk_mut 418 11 0 3 0 0 1 15

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-B L-B W98 F486 W98 F486 Hydrophobic Hydrophobic 0.16 View
L-B L-B Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.33 View
L-B L-B Y33 F486 Y33 F486 Hydrogen Bonds Hydrogen Bonds 0.33 View
L-B L-B W98 F486 W98 F486 Hydrophobic Hydrophobic 0.16 View
L-B L-B L95 E484 L95 E484 Hydrophobic Hydrophobic 0.18 View
L-B L-B L95 E484 L95 E484 Hydrophobic Hydrophobic 0.34 View
L-B L-B W98 F486 W98 F486 Hydrophobic Hydrophobic 0.14 View
L-B L-B L95 E484 L95 E484 Hydrophobic Hydrophobic 0.21 View
L-B L-B Y33 F486 Y33 F486 Hydrophobic Hydrophobic 0.44 View
L-B L-B Y92 F486 Y92 F486 Aromatic Stacking Aromatic Stacking 0.23 View
L-B L-B W98 F486 W98 F486 Hydrophobic Hydrophobic 0.22 View
L-B L-B Y33 F486 Y33 F486 Hydrophobic Hydrophobic 0.43 View
L-B L-B Y33 C488 Y33 C488 Hydrogen Bonds Hydrogen Bonds 0.37 View
L-B L-B Y92 F486 Y92 F486 Hydrophobic Hydrophobic 0.2 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7K45 | 7K45_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7K45_uk_mut L-B S32 T478 Hydrogen Bonds 3.54 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph