VTR

48 main matches found (116 matches in total )

Execution time: 80.0 seconds

Match RMSD = 0.33

VTR = 0.01

Average AVD = 0.25 Å

Parameters

Chains(7JWB.pdb ): B versus D

Chains(7JWB_uk_mut.pdb ) B versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JWB 3289 68 23 32 0 1 4 128
B7JWB_uk_mut 3288 78 23 30 0 1 4 136

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
D-B D-B R41 D405 R41 D405 Attractive Attractive 0.23 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.09 View
D-B D-B F250 K417 F250 K417 Hydrophobic Hydrophobic 0.45 View
D-B D-B D115 K378 D115 K378 Attractive Attractive 0.28 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.08 View
D-B D-B F250 L455 F250 L455 Hydrophobic Hydrophobic 0.31 View
D-B D-B Y180 R403 Y180 R403 Hydrogen Bonds Hydrogen Bonds 0.2 View
D-B D-B L196 F486 L196 F486 Hydrophobic Hydrophobic 0.16 View
D-B D-B F250 L455 F250 L455 Hydrophobic Hydrophobic 0.39 View
D-B D-B F250 Y453 F250 Y453 Hydrophobic Hydrophobic 0.45 View
D-B D-B F250 Y453 F250 Y453 Aromatic Stacking Aromatic Stacking 0.33 View
D-B D-B V186 F486 V186 F486 Hydrophobic Hydrophobic 0.2 View
D-B D-B W248 Y489 W248 Y489 Aromatic Stacking Aromatic Stacking 0.08 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.14 View
D-B D-B Y206 Y449 Y206 Y449 Hydrophobic Hydrophobic 0.23 View
D-B D-B S204 Q493 S204 Q493 Hydrogen Bonds Hydrogen Bonds 0.33 View
D-B D-B E194 F486 E194 F486 Hydrophobic Hydrophobic 0.21 View
D-B D-B E47 R408 E47 R408 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.13 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.08 View
D-B D-B F250 K417 F250 K417 Hydrophobic Hydrophobic 0.39 View
D-B D-B V186 F486 V186 F486 Hydrophobic Hydrophobic 0.16 View
D-B D-B L196 F486 L196 F486 Hydrophobic Hydrophobic 0.12 View
D-B D-B R199 E484 R199 E484 Attractive Attractive 0.17 View
D-B D-B R41 D405 R41 D405 Attractive Attractive 0.28 View
D-B D-B G257 Y421 G257 Y421 Hydrogen Bonds Hydrogen Bonds 1.72 View
D-B D-B Q3 T415 Q3 T415 Hydrogen Bonds Hydrogen Bonds 0.17 View
D-B D-B E47 R408 E47 R408 Attractive Attractive 0.16 View
D-B D-B E47 R408 E47 R408 Attractive Attractive 0.2 View
D-B D-B R199 E484 R199 E484 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.08 View
D-B D-B Y206 Y449 Y206 Y449 Aromatic Stacking Aromatic Stacking 0.16 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.1 View
D-B D-B A251 F456 A251 F456 Hydrophobic Hydrophobic 0.59 View
D-B D-B F250 L455 F250 L455 Hydrophobic Hydrophobic 0.45 View
D-B D-B Q3 T415 Q3 T415 Hydrophobic Hydrophobic 0.11 View
D-B D-B S203 R403 S203 R403 Hydrogen Bonds Hydrogen Bonds 0.63 View
D-B D-B F250 K417 F250 K417 Hydrophobic Hydrophobic 0.48 View
D-B D-B L196 F486 L196 F486 Hydrophobic Hydrophobic 0.2 View
D-B D-B W248 F456 W248 F456 Hydrophobic Hydrophobic 0.27 View
D-B D-B W264 F486 W264 F486 Hydrophobic Hydrophobic 0.09 View
D-B D-B E194 F486 E194 F486 Hydrophobic Hydrophobic 0.12 View
D-B D-B R199 E484 R199 E484 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.22 View
D-B D-B E47 R408 E47 R408 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.22 View
D-B D-B E47 R408 E47 R408 Attractive Attractive 0.27 View
D-B D-B W248 F456 W248 F456 Hydrophobic Hydrophobic 0.2 View
D-B D-B Y97 R408 Y97 R408 Hydrogen Bonds Hydrogen Bonds 0.16 View
D-B D-B W248 L455 W248 L455 Hydrophobic Hydrophobic 0.29 View
D-B D-B W117 Q414 W117 Q414 Hydrogen Bonds Hydrogen Bonds 0.14 View
D-B D-B W248 Y489 W248 Y489 Hydrogen Bonds Hydrogen Bonds 0.17 View
D-B D-B R41 D405 R41 D405 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.26 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.12 View
D-B D-B Y180 Y505 Y180 Y505 Aromatic Stacking Aromatic Stacking 0.19 View
D-B D-B Y177 Q498 Y177 Q498 Hydrogen Bonds Hydrogen Bonds 0.31 View
D-B D-B L196 F486 L196 F486 Hydrophobic Hydrophobic 0.11 View
D-B D-B Y206 Y449 Y206 Y449 Hydrophobic Hydrophobic 0.25 View
D-B D-B R199 E484 R199 E484 Attractive Attractive 0.09 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.13 View
D-B D-B W248 F456 W248 F456 Hydrophobic Hydrophobic 0.27 View
D-B D-B V186 F486 V186 F486 Hydrophobic Hydrophobic 0.29 View
D-B D-B V186 F486 V186 F486 Hydrophobic Hydrophobic 0.18 View
D-B D-B R199 E484 R199 E484 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.14 View
D-B D-B F250 Y453 F250 Y453 Hydrophobic Hydrophobic 0.37 View
D-B D-B R199 E484 R199 E484 Attractive Attractive 0.14 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.1 View
D-B D-B V186 F486 V186 F486 Hydrophobic Hydrophobic 0.3 View
D-B D-B R41 D405 R41 D405 Attractive Attractive 0.27 View
D-B D-B Y206 Y449 Y206 Y449 Hydrophobic Hydrophobic 0.2 View
D-B D-B Y180 Y505 Y180 Y505 Hydrophobic Hydrophobic 0.39 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.13 View
D-B D-B Y180 Y505 Y180 Y505 Hydrophobic Hydrophobic 0.36 View
D-B D-B Q119 T415 Q119 T415 Hydrogen Bonds Hydrogen Bonds 0.12 View
D-B D-B F250 Y453 F250 Y453 Hydrophobic Hydrophobic 0.42 View
D-B D-B F250 Y453 F250 Y453 Hydrophobic Hydrophobic 0.4 View
D-B D-B Q119 Q409 Q119 Q409 Hydrogen Bonds Hydrogen Bonds 0.21 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.1 View
D-B D-B L196 F486 L196 F486 Hydrophobic Hydrophobic 0.1 View
D-B D-B R199 E484 R199 E484 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.16 View
D-B D-B W248 F456 W248 F456 Hydrophobic Hydrophobic 0.2 View
D-B D-B Y180 Y505 Y180 Y505 Hydrophobic Hydrophobic 0.18 View
D-B D-B Y97 D405 Y97 D405 Hydrogen Bonds Hydrogen Bonds 0.33 View
D-B D-B Q3 T415 Q3 T415 Hydrophobic Hydrophobic 0.15 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.09 View
D-B D-B Y206 S494 Y206 S494 Hydrogen Bonds Hydrogen Bonds 0.14 View
D-B D-B F250 K417 F250 K417 Hydrophobic Hydrophobic 0.38 View
D-B D-B F250 L455 F250 L455 Hydrophobic Hydrophobic 0.35 View
D-B D-B L196 F486 L196 F486 Hydrophobic Hydrophobic 0.15 View
D-B D-B S203 G496 S203 G496 Hydrogen Bonds Hydrogen Bonds 0.6 View
D-B D-B W248 L455 W248 L455 Hydrophobic Hydrophobic 0.25 View
D-B D-B D115 K378 D115 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.26 View
D-B D-B L261 F486 L261 F486 Hydrophobic Hydrophobic 0.21 View
D-B D-B Y177 G496 Y177 G496 Hydrogen Bonds Hydrogen Bonds 0.41 View
D-B D-B E47 R408 E47 R408 Attractive Attractive 0.17 View
D-B D-B W117 Q414 W117 Q414 Hydrogen Bonds Hydrogen Bonds 0.06 View
D-B D-B F250 L455 F250 L455 Hydrophobic Hydrophobic 0.43 View
D-B D-B Q119 T415 Q119 T415 Hydrogen Bonds Hydrogen Bonds 0.13 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.08 View
D-B D-B A251 F456 A251 F456 Hydrophobic Hydrophobic 0.52 View
D-B D-B R41 D405 R41 D405 Attractive Attractive 0.27 View
D-B D-B E47 R408 E47 R408 Attractive Attractive 0.16 View
D-B D-B S178 Y505 S178 Y505 Hydrogen Bonds Hydrogen Bonds 0.47 View
D-B D-B L196 F486 L196 F486 Hydrophobic Hydrophobic 0.18 View
D-B D-B F250 L455 F250 L455 Hydrophobic Hydrophobic 0.3 View
D-B D-B S204 Q493 S204 Q493 Hydrogen Bonds Hydrogen Bonds 0.23 View
D-B D-B R199 E484 R199 E484 Attractive Attractive 0.06 View
D-B D-B L196 F486 L196 F486 Hydrophobic Hydrophobic 0.16 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.1 View
D-B D-B F250 L455 F250 L455 Hydrophobic Hydrophobic 0.33 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.09 View
D-B D-B W248 L455 W248 L455 Hydrophobic Hydrophobic 0.38 View
D-B D-B F250 L455 F250 L455 Hydrophobic Hydrophobic 0.4 View
D-B D-B R41 D405 R41 D405 Attractive Attractive 0.23 View
D-B D-B G257 Y473 G257 Y473 Hydrogen Bonds Hydrogen Bonds 1.17 View
D-B D-B F250 K417 F250 K417 Hydrophobic Hydrophobic 0.42 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.1 View
D-B D-B L261 F486 L261 F486 Hydrophobic Hydrophobic 0.22 View
D-B D-B R41 R408 R41 R408 Repulsive Repulsive 0.09 View
D-B D-B W248 Y489 W248 Y489 Hydrophobic Hydrophobic 0.1 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JWB | 7JWB_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JWB D-B Y177 N501 Hydrogen Bonds 2.82 View
7JWB D-B Y177 N501 Hydrogen Bonds 3.89 View
7JWB D-B G257 R457 Hydrogen Bonds 3.42 View
7JWB D-B G257 Y473 Hydrogen Bonds 3.31 View
7JWB_uk_mut D-B V186 F486 Hydrophobic 4.45 View
7JWB_uk_mut D-B Y206 Y449 Hydrophobic 4.32 View
7JWB_uk_mut D-B W248 Y489 Hydrophobic 4.43 View
7JWB_uk_mut D-B W248 Y489 Hydrophobic 4.45 View
7JWB_uk_mut D-B F250 Y453 Hydrophobic 4.42 View
7JWB_uk_mut D-B F250 Y453 Hydrophobic 4.29 View
7JWB_uk_mut D-B F250 L455 Hydrophobic 4.39 View
7JWB_uk_mut D-B F250 L455 Hydrophobic 4.29 View
7JWB_uk_mut D-B F250 L455 Hydrophobic 4.21 View
7JWB_uk_mut D-B F250 Q493 Hydrophobic 4.43 View
7JWB_uk_mut D-B A251 F456 Hydrogen Bonds 3.87 View
7JWB_uk_mut D-B G257 L455 Hydrogen Bonds 3.36 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph