VTR

32 main matches found (78 matches in total )

Execution time: 82.0 seconds

Match RMSD = 0.39

VTR = 0.0

Average AVD = 0.31 Å

Parameters

Chains(7JWB.pdb ): A versus D

Chains(7JWB_uk_mut.pdb ) A versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JWB 3289 46 7 24 0 0 5 82
B7JWB_uk_mut 3288 49 7 23 0 0 5 84

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
D-A D-A W101 Y489 W101 Y489 Aromatic Stacking Aromatic Stacking 0.1 View
D-A D-A A104 L455 A104 L455 Hydrophobic Hydrophobic 0.69 View
D-A D-A R52 E484 R52 E484 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.13 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.11 View
D-A D-A Y35 Y453 Y35 Y453 Hydrogen Bonds Hydrogen Bonds 0.22 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.14 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.33 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.63 View
D-A D-A Y35 Y489 Y35 Y489 Hydrophobic Hydrophobic 0.47 View
D-A D-A Y61 Q493 Y61 Q493 Hydrogen Bonds Hydrogen Bonds 0.17 View
D-A D-A Y33 Y505 Y33 Y505 Aromatic Stacking Aromatic Stacking 0.19 View
D-A D-A Y54 Y489 Y54 Y489 Aromatic Stacking Aromatic Stacking 0.14 View
D-A D-A R52 E484 R52 E484 Attractive Attractive 0.18 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.31 View
D-A D-A R52 E484 R52 E484 Attractive Attractive 0.13 View
D-A D-A Y30 N501 Y30 R403 Hydrogen Bonds Hydrogen Bonds 1.68 View
D-A D-A R52 C488 R52 C488 Hydrogen Bonds Hydrogen Bonds 0.11 View
D-A D-A Y35 Y489 Y35 Y489 Hydrophobic Hydrophobic 0.49 View
D-A D-A R52 E484 R52 E484 Attractive Attractive 0.15 View
D-A D-A E47 F486 E47 F486 Hydrophobic Hydrophobic 0.25 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.64 View
D-A D-A W101 F456 W101 F456 Hydrophobic Hydrophobic 0.06 View
D-A D-A S56 G496 S56 G496 Hydrogen Bonds Hydrogen Bonds 0.62 View
D-A D-A Y35 Y489 Y35 Y489 Aromatic Stacking Aromatic Stacking 0.16 View
D-A D-A S57 S494 S57 S494 Hydrogen Bonds Hydrogen Bonds 0.36 View
D-A D-A Y30 G496 Y30 G496 Hydrogen Bonds Hydrogen Bonds 0.36 View
D-A D-A L114 F486 L114 F486 Hydrophobic Hydrophobic 0.16 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.11 View
D-A D-A Y33 R403 Y33 R403 Hydrogen Bonds Hydrogen Bonds 0.2 View
D-A D-A V39 F486 V39 F486 Hydrophobic Hydrophobic 0.07 View
D-A D-A Y35 L455 Y35 L455 Hydrophobic Hydrophobic 0.34 View
D-A D-A Y54 Y489 Y54 Y489 Hydrophobic Hydrophobic 0.36 View
D-A D-A S31 Y505 S31 Y505 Hydrogen Bonds Hydrogen Bonds 0.69 View
D-A D-A Y33 Y505 Y33 Y505 Hydrophobic Hydrophobic 0.26 View
D-A D-A R52 E484 R52 E484 Attractive Attractive 0.11 View
D-A D-A Y33 Y505 Y33 Y505 Hydrogen Bonds Hydrogen Bonds 0.32 View
D-A D-A R52 C488 R52 C488 Hydrogen Bonds Hydrogen Bonds 0.11 View
D-A D-A F103 K417 F103 K417 Hydrophobic Hydrophobic 0.41 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.09 View
D-A D-A E47 F486 E47 F486 Hydrophobic Hydrophobic 0.17 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.65 View
D-A D-A Y54 Y489 Y54 Y489 Hydrophobic Hydrophobic 0.33 View
D-A D-A Y33 K417 Y33 K417 Hydrogen Bonds Hydrogen Bonds 0.18 View
D-A D-A Y59 S494 Y59 S494 Hydrogen Bonds Hydrogen Bonds 0.23 View
D-A D-A S111 Y473 S111 Y473 Hydrogen Bonds Hydrogen Bonds 0.57 View
D-A D-A W101 F456 W101 F456 Hydrophobic Hydrophobic 0.04 View
D-A D-A Y35 Y489 Y35 Y489 Hydrogen Bonds Hydrogen Bonds 0.3 View
D-A D-A W101 F456 W101 F456 Aromatic Stacking Aromatic Stacking 0.05 View
D-A D-A V39 F486 V39 F486 Hydrophobic Hydrophobic 0.26 View
D-A D-A F103 L455 F103 L455 Hydrophobic Hydrophobic 0.41 View
D-A D-A Y54 Y489 Y54 Y489 Hydrophobic Hydrophobic 0.36 View
D-A D-A V39 F486 V39 F486 Hydrophobic Hydrophobic 0.2 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.37 View
D-A D-A Y61 Q493 Y61 Q493 Hydrogen Bonds Hydrogen Bonds 0.13 View
D-A D-A F103 L455 F103 L455 Hydrophobic Hydrophobic 0.37 View
D-A D-A F103 L455 F103 L455 Hydrophobic Hydrophobic 0.44 View
D-A D-A Y30 Q498 Y30 Q498 Hydrogen Bonds Hydrogen Bonds 0.27 View
D-A D-A V39 F486 V39 F486 Hydrophobic Hydrophobic 0.13 View
D-A D-A S56 R403 S56 R403 Hydrogen Bonds Hydrogen Bonds 0.66 View
D-A D-A L114 F486 L114 F486 Hydrophobic Hydrophobic 0.18 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.21 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.66 View
D-A D-A Y33 Y505 Y33 Y505 Hydrophobic Hydrophobic 0.45 View
D-A D-A F103 L455 F103 L455 Hydrophobic Hydrophobic 0.42 View
D-A D-A L114 N487 L114 N487 Hydrogen Bonds Hydrogen Bonds 0.23 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.67 View
D-A D-A S57 Y453 S57 Y453 Hydrogen Bonds Hydrogen Bonds 0.32 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.08 View
D-A D-A R52 E484 R52 E484 Attractive Attractive 0.18 View
D-A D-A Y33 Y505 Y33 Y505 Hydrophobic Hydrophobic 0.36 View
D-A D-A F103 K417 F103 K417 Hydrophobic Hydrophobic 0.39 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.15 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.24 View
D-A D-A L49 F486 L49 F486 Hydrophobic Hydrophobic 0.16 View
D-A D-A F103 L455 F103 L455 Hydrophobic Hydrophobic 0.36 View
D-A D-A A104 F456 A104 F456 Hydrophobic Hydrophobic 0.68 View
D-A D-A W101 Y489 W101 Y489 Hydrophobic Hydrophobic 0.17 View
D-A D-A R52 E484 R52 E484 Attractive Attractive 0.12 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JWB | 7JWB_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JWB D-A Y30 N501 Hydrogen Bonds 2.79 View
7JWB D-A G110 Y421 Hydrogen Bonds 3.23 View
7JWB D-A G110 R457 Hydrogen Bonds 3.03 View
7JWB_uk_mut D-A Y33 Y505 Hydrophobic 4.42 View
7JWB_uk_mut D-A L49 F486 Hydrophobic 4.41 View
7JWB_uk_mut D-A Y54 Y489 Hydrophobic 4.39 View
7JWB_uk_mut D-A G110 L455 Hydrogen Bonds 3.40 View
7JWB_uk_mut D-A G110 Y473 Hydrogen Bonds 3.25 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph