VTR

2 main matches found (3 matches in total )

Execution time: 33.0 seconds

Match RMSD = 0.4

VTR = 0.06

Average AVD = 0.39 Å

Parameters

Chains(7JW0.pdb ): E versus F

Chains(7JW0_uk_mut.pdb ) E versus F

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JW0 4314 1 0 2 0 0 0 3
B7JW0_uk_mut 4314 10 0 11 0 0 1 22

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-F E-F C379 S94 C379 S94 Hydrogen Bonds Hydrogen Bonds 0.52 View
E-F E-F C379 S94 C379 S94 Hydrogen Bonds Hydrogen Bonds 0.31 View
E-F E-F Y380 V93 Y380 V93 Hydrophobic Hydrophobic 0.33 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JW0 | 7JW0_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JW0_uk_mut E-F Y380 Y92 Hydrophobic 4.40 View
7JW0_uk_mut E-F Y380 Y92 Hydrophobic 3.94 View
7JW0_uk_mut E-F Y380 Y92 Aromatic Stacking 5.34 View
7JW0_uk_mut E-F Y380 Y92 Hydrophobic 3.89 View
7JW0_uk_mut E-F Y380 Y92 Hydrophobic 3.71 View
7JW0_uk_mut E-F Y380 Y92 Hydrophobic 2.94 View
7JW0_uk_mut E-F Y380 Y92 Hydrophobic 4.29 View
7JW0_uk_mut E-F Y380 Y92 Hydrophobic 3.70 View
7JW0_uk_mut E-F Y380 V93 Hydrophobic 3.98 View
7JW0_uk_mut E-F Y380 V93 Hydrophobic 3.58 View
7JW0_uk_mut E-F G381 Y32 Hydrogen Bonds 2.94 View
7JW0_uk_mut E-F S383 S94 Hydrogen Bonds 3.62 View
7JW0_uk_mut E-F P412 Q27 Hydrogen Bonds 2.67 View
7JW0_uk_mut E-F G413 Q27 Hydrogen Bonds 3.08 View
7JW0_uk_mut E-F G413 Q27 Hydrogen Bonds 3.66 View
7JW0_uk_mut E-F D427 S28 Hydrogen Bonds 3.86 View
7JW0_uk_mut E-F D427 Y92 Hydrogen Bonds 3.03 View
7JW0_uk_mut E-F D428 Y92 Hydrogen Bonds 3.26 View
7JW0_uk_mut E-F F429 Y92 Hydrogen Bonds 2.82 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph