VTR

12 main matches found (13 matches in total )

Execution time: 5.0 seconds

Match RMSD = 0.31

VTR = 0.0

Average AVD = 0.29 Å

Parameters

Chains(7JVA.pdb ): A versus L

Chains(7JVA_uk_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JVA 420 1 2 12 0 0 0 15
B7JVA_uk_mut 420 1 2 13 0 0 0 16

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-A L-A N32 S375 N32 S375 Hydrogen Bonds Hydrogen Bonds 0.44 View
L-A L-A Y33 P384 Y33 P384 Hydrophobic Hydrophobic 0.24 View
L-A L-A S31 T376 S31 T376 Hydrogen Bonds Hydrogen Bonds 0.36 View
L-A L-A N32 F377 N32 F377 Hydrogen Bonds Hydrogen Bonds 0.26 View
L-A L-A Y33 C379 Y33 C379 Hydrogen Bonds Hydrogen Bonds 0.07 View
L-A L-A D52 K378 D52 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.27 View
L-A L-A E51 S383 E51 S383 Hydrogen Bonds Hydrogen Bonds 0.41 View
L-A L-A S31 F377 S31 F377 Hydrogen Bonds Hydrogen Bonds 0.43 View
L-A L-A S69 Q414 S69 Q414 Hydrogen Bonds Hydrogen Bonds 0.29 View
L-A L-A Y33 C379 Y33 C379 Hydrogen Bonds Hydrogen Bonds 0.19 View
L-A L-A E51 S383 E51 S383 Hydrogen Bonds Hydrogen Bonds 0.37 View
L-A L-A D52 K378 D52 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.35 View
L-A L-A S28 R408 S28 R408 Hydrogen Bonds Hydrogen Bonds 0.12 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JVA | 7JVA_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JVA_uk_mut L-A A30 K378 Hydrogen Bonds 3.35 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph