VTR

8 main matches found (39 matches in total )

Execution time: 6.0 seconds

Match RMSD = 0.3

VTR = 0.0

Average AVD = 0.28 Å

Parameters

Chains(7JVA.pdb ): A versus H

Chains(7JVA_uk_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JVA 420 31 0 7 0 0 1 39
B7JVA_uk_mut 420 31 0 9 0 0 1 41

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-A H-A W101 Y369 W101 Y369 Hydrophobic Hydrophobic 0.21 View
H-A H-A W101 F377 W101 F377 Hydrophobic Hydrophobic 0.22 View
H-A H-A W101 P384 W101 P384 Hydrophobic Hydrophobic 0.18 View
H-A H-A W101 P384 W101 P384 Hydrophobic Hydrophobic 0.21 View
H-A H-A Q53 N370 Q53 N370 Hydrogen Bonds Hydrogen Bonds 0.51 View
H-A H-A W33 N370 W33 N370 Hydrophobic Hydrophobic 0.25 View
H-A H-A R103 F374 R103 F374 Hydrogen Bonds Hydrogen Bonds 0.47 View
H-A H-A W100 T385 W100 T385 Hydrophobic Hydrophobic 0.39 View
H-A H-A W101 Y369 W101 Y369 Hydrophobic Hydrophobic 0.24 View
H-A H-A W101 T385 W101 T385 Hydrophobic Hydrophobic 0.29 View
H-A H-A W101 Y369 W101 Y369 Hydrophobic Hydrophobic 0.26 View
H-A H-A W101 Y369 W101 Y369 Aromatic Stacking Aromatic Stacking 0.26 View
H-A H-A W33 N370 W33 N370 Hydrogen Bonds Hydrogen Bonds 0.42 View
H-A H-A W101 F377 W101 F377 Hydrophobic Hydrophobic 0.21 View
H-A H-A R103 S371 R103 S371 Hydrogen Bonds Hydrogen Bonds 0.26 View
H-A H-A W100 Y369 W100 Y369 Hydrophobic Hydrophobic 0.41 View
H-A H-A R103 F374 R103 F374 Hydrogen Bonds Hydrogen Bonds 0.31 View
H-A H-A W100 Y369 W100 Y369 Hydrophobic Hydrophobic 0.38 View
H-A H-A Y59 A372 Y59 A372 Hydrophobic Hydrophobic 0.33 View
H-A H-A R103 S371 R103 S371 Hydrogen Bonds Hydrogen Bonds 0.42 View
H-A H-A W101 Y369 W101 Y369 Hydrophobic Hydrophobic 0.2 View
H-A H-A W101 Y369 W101 Y369 Hydrophobic Hydrophobic 0.14 View
H-A H-A W100 T385 W100 T385 Hydrophobic Hydrophobic 0.35 View
H-A H-A W101 P384 W101 P384 Hydrophobic Hydrophobic 0.18 View
H-A H-A Y59 A372 Y59 A372 Hydrogen Bonds Hydrogen Bonds 0.15 View
H-A H-A W101 Y369 W101 Y369 Hydrophobic Hydrophobic 0.16 View
H-A H-A W100 Y369 W100 Y369 Hydrophobic Hydrophobic 0.33 View
H-A H-A W100 T385 W100 T385 Hydrophobic Hydrophobic 0.28 View
H-A H-A W101 P384 W101 P384 Hydrophobic Hydrophobic 0.19 View
H-A H-A W101 Y369 W101 Y369 Hydrophobic Hydrophobic 0.3 View
H-A H-A W101 P384 W101 P384 Hydrophobic Hydrophobic 0.16 View
H-A H-A W101 F377 W101 F377 Hydrophobic Hydrophobic 0.19 View
H-A H-A W101 F377 W101 F377 Hydrophobic Hydrophobic 0.19 View
H-A H-A W101 P384 W101 P384 Hydrophobic Hydrophobic 0.19 View
H-A H-A Y59 A372 Y59 A372 Hydrophobic Hydrophobic 0.33 View
H-A H-A W101 P384 W101 P384 Hydrophobic Hydrophobic 0.2 View
H-A H-A W101 P384 W101 P384 Hydrophobic Hydrophobic 0.22 View
H-A H-A W100 Y369 W100 Y369 Hydrophobic Hydrophobic 0.41 View
H-A H-A L102 A372 L102 A372 Hydrophobic Hydrophobic 0.65 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JVA | 7JVA_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JVA_uk_mut H-A L102 N370 Hydrogen Bonds 3.67 View
7JVA_uk_mut H-A R103 A372 Hydrogen Bonds 3.47 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph