VTR

3 main matches found (8 matches in total )

Execution time: 19.0 seconds

Match RMSD = 0.59

VTR = 0.06

Average AVD = 0.56 Å

Parameters

Chains(7JV6.pdb ): E versus G

Chains(7JV6_uk_mut.pdb ) E versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7JV6 3612 5 0 3 0 0 0 8
B7JV6_uk_mut 3609 6 4 10 0 0 0 20

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-G E-G Y449 A62 Y449 A62 Hydrophobic Hydrophobic 0.42 View
E-G E-G E484 S58 E484 S58 Hydrogen Bonds Hydrogen Bonds 0.99 View
E-G E-G Y449 A62 Y449 A62 Hydrogen Bonds Hydrogen Bonds 0.5 View
E-G E-G E484 S58 E484 S58 Hydrogen Bonds Hydrogen Bonds 0.68 View
E-G E-G Y449 R63 Y449 R63 Hydrophobic Hydrophobic 0.61 View
E-G E-G Y449 A62 Y449 A62 Hydrophobic Hydrophobic 0.4 View
E-G E-G Y449 A62 Y449 A62 Hydrophobic Hydrophobic 0.41 View
E-G E-G Y449 A62 Y449 A62 Hydrophobic Hydrophobic 0.45 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7JV6 | 7JV6_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7JV6_uk_mut E-G Y449 A62 Hydrophobic 4.11 View
7JV6_uk_mut E-G Y449 S78 Hydrogen Bonds 2.88 View
7JV6_uk_mut E-G E484 H57 Attractive, Hydrogen Bonds 2.70 View
7JV6_uk_mut E-G E484 H57 Attractive, Hydrogen Bonds 3.98 View
7JV6_uk_mut E-G E484 H57 Attractive, Hydrogen Bonds 3.32 View
7JV6_uk_mut E-G E484 H57 Attractive, Hydrogen Bonds 3.21 View
7JV6_uk_mut E-G E484 W59 Hydrogen Bonds 3.84 View
7JV6_uk_mut E-G Q498 S78 Hydrogen Bonds 3.51 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph