VTR

7 main matches found (12 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.51

VTR = 0.0

Average AVD = 0.45 Å

Parameters

Chains(7EAM.pdb ): B versus D

Chains(7EAM_uk_mut.pdb ) B versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7EAM 1266 5 2 5 0 0 0 12
B7EAM_uk_mut 1266 5 2 5 0 0 0 12

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-D B-D L518 H30 L518 H30 Hydrophobic Hydrophobic 0.25 View
B-D B-D R357 S93 R357 S93 Hydrogen Bonds Hydrogen Bonds 0.97 View
B-D B-D L518 W92 L518 W92 Hydrophobic Hydrophobic 0.28 View
B-D B-D L518 W92 L518 W92 Hydrophobic Hydrophobic 0.24 View
B-D B-D A520 W92 A520 W92 Hydrophobic Hydrophobic 0.31 View
B-D B-D E516 Y32 E516 Y32 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-D B-D E516 Y32 E516 Y32 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-D B-D L518 Y32 L518 Y32 Hydrophobic Hydrophobic 0.68 View
B-D B-D H519 H30 H519 H30 Hydrogen Bonds Hydrogen Bonds 0.18 View
B-D B-D R357 S93 R357 S93 Hydrogen Bonds Hydrogen Bonds 0.74 View
B-D B-D K462 D56 K462 D56 Attractive Attractive 0.42 View
B-D B-D K462 D56 K462 D56 Attractive Attractive 0.39 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7EAM | 7EAM_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph