VTR

13 main matches found (45 matches in total )

Execution time: 6.0 seconds

Match RMSD = 0.38

VTR = 0.0

Average AVD = 0.34 Å

Parameters

Chains(7E23.pdb ): A versus B

Chains(7E23_uk_mut.pdb ) A versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7E23 403 32 1 11 0 0 1 45
B7E23_uk_mut 403 35 2 12 0 0 1 50

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-B A-B E484 Y111 E484 Y111 Hydrophobic Hydrophobic 0.31 View
A-B A-B Q493 F29 Q493 F29 Hydrophobic Hydrophobic 0.25 View
A-B A-B A475 Y25 A475 Y25 Hydrophobic Hydrophobic 0.44 View
A-B A-B L455 F29 L455 F29 Hydrophobic Hydrophobic 0.41 View
A-B A-B L455 F29 L455 F29 Hydrophobic Hydrophobic 0.21 View
A-B A-B F490 I106 F490 I106 Hydrophobic Hydrophobic 0.55 View
A-B A-B Y489 Y25 Y489 Y25 Hydrophobic Hydrophobic 0.13 View
A-B A-B L455 F29 L455 F29 Hydrophobic Hydrophobic 0.31 View
A-B A-B S494 R103 S494 R103 Hydrogen Bonds Hydrogen Bonds 0.71 View
A-B A-B A475 Y25 A475 Y25 Hydrophobic Hydrophobic 0.48 View
A-B A-B F486 C22 F486 C22 Hydrophobic Hydrophobic 0.37 View
A-B A-B F456 Y25 F456 Y25 Hydrophobic Hydrophobic 0.24 View
A-B A-B Q493 F29 Q493 F29 Hydrophobic Hydrophobic 0.36 View
A-B A-B F486 Y111 F486 Y111 Hydrophobic Hydrophobic 0.25 View
A-B A-B F486 V24 F486 V24 Hydrophobic Hydrophobic 0.46 View
A-B A-B G485 R97 G485 R97 Hydrogen Bonds Hydrogen Bonds 0.17 View
A-B A-B F486 R97 F486 R97 Hydrophobic Hydrophobic 0.42 View
A-B A-B Q493 F29 Q493 F29 Hydrophobic Hydrophobic 0.25 View
A-B A-B Q493 F29 Q493 F29 Hydrophobic Hydrophobic 0.29 View
A-B A-B Q493 F29 Q493 F29 Hydrophobic Hydrophobic 0.35 View
A-B A-B F486 C95 F486 C95 Hydrophobic Hydrophobic 0.35 View
A-B A-B Y489 Y25 Y489 Y25 Aromatic Stacking Aromatic Stacking 0.14 View
A-B A-B L455 F29 L455 F29 Hydrophobic Hydrophobic 0.12 View
A-B A-B L452 V105 L452 V105 Hydrophobic Hydrophobic 0.61 View
A-B A-B Y489 Y25 Y489 Y25 Hydrogen Bonds Hydrogen Bonds 0.19 View
A-B A-B Q493 R103 Q493 R103 Hydrogen Bonds Hydrogen Bonds 0.22 View
A-B A-B Y489 Y25 Y489 Y25 Hydrophobic Hydrophobic 0.09 View
A-B A-B Q493 R103 Q493 R103 Hydrogen Bonds Hydrogen Bonds 0.43 View
A-B A-B Y489 A23 Y489 A23 Hydrogen Bonds Hydrogen Bonds 0.19 View
A-B A-B F490 I106 F490 I106 Hydrophobic Hydrophobic 0.49 View
A-B A-B L452 V105 L452 V105 Hydrophobic Hydrophobic 0.45 View
A-B A-B Y489 Y25 Y489 Y25 Hydrophobic Hydrophobic 0.09 View
A-B A-B N487 D113 N487 D113 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-B A-B E484 Y111 E484 Y111 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-B A-B F486 R97 F486 R97 Hydrophobic Hydrophobic 0.34 View
A-B A-B F486 V24 F486 V24 Hydrophobic Hydrophobic 0.46 View
A-B A-B F486 C95 F486 C95 Hydrophobic Hydrophobic 0.34 View
A-B A-B Q493 Y32 Q493 Y32 Hydrogen Bonds Hydrogen Bonds 0.41 View
A-B A-B A475 Y25 A475 Y25 Hydrogen Bonds Hydrogen Bonds 0.97 View
A-B A-B F456 Y25 F456 Y25 Hydrophobic Hydrophobic 0.15 View
A-B A-B Y489 Y25 Y489 Y25 Hydrophobic Hydrophobic 0.13 View
A-B A-B Y489 Y25 Y489 Y25 Hydrophobic Hydrophobic 0.16 View
A-B A-B S494 R103 S494 R103 Hydrogen Bonds Hydrogen Bonds 0.42 View
A-B A-B A475 Y25 A475 Y25 Hydrophobic Hydrophobic 0.47 View
A-B A-B E484 R97 E484 R97 Attractive Attractive 0.28 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7E23 | 7E23_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7E23_uk_mut A-B Y449 R103 Hydrophobic 4.47 View
7E23_uk_mut A-B L452 V105 Hydrophobic 4.24 View
7E23_uk_mut A-B E484 R97 Attractive 5.85 View
7E23_uk_mut A-B Y489 Y25 Hydrophobic 4.48 View
7E23_uk_mut A-B Q493 Y32 Hydrogen Bonds 3.78 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph