VTR

18 main matches found (35 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.4

VTR = 0.01

Average AVD = 0.37 Å

Parameters

Chains(7DPM.pdb ): L versus J

Chains(7DPM_uk_mut.pdb ) L versus J

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7DPM 2531 17 1 16 0 0 1 35
B7DPM_uk_mut 2531 22 1 21 0 0 1 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
J-L J-L R110 S375 R110 S375 Hydrogen Bonds Hydrogen Bonds 0.17 View
J-L J-L Y107 F377 Y107 F377 Hydrophobic Hydrophobic 0.34 View
J-L J-L Y107 F377 Y107 F377 Hydrophobic Hydrophobic 0.34 View
J-L J-L Y108 T376 Y108 T376 Hydrogen Bonds Hydrogen Bonds 0.15 View
J-L J-L Y107 F377 Y107 F377 Hydrogen Bonds Hydrogen Bonds 0.5 View
J-L J-L Y108 V407 Y108 V407 Hydrophobic Hydrophobic 0.27 View
J-L J-L Y107 Y369 Y107 Y369 Aromatic Stacking Aromatic Stacking 0.3 View
J-L J-L R110 F374 R110 F374 Hydrogen Bonds Hydrogen Bonds 0.37 View
J-L J-L Y108 V407 Y108 V407 Hydrophobic Hydrophobic 0.27 View
J-L J-L Y107 Y369 Y107 Y369 Hydrogen Bonds Hydrogen Bonds 0.4 View
J-L J-L Y101 K378 Y101 K378 Hydrophobic Hydrophobic 0.37 View
J-L J-L Y101 K378 Y101 K378 Hydrogen Bonds Hydrogen Bonds 0.76 View
J-L J-L Y102 Y369 Y102 Y369 Hydrogen Bonds Hydrogen Bonds 0.62 View
J-L J-L Y107 F377 Y107 F377 Hydrophobic Hydrophobic 0.29 View
J-L J-L F109 V503 F109 V503 Hydrophobic Hydrophobic 0.61 View
J-L J-L E111 Y508 E111 Y508 Hydrogen Bonds Hydrogen Bonds 0.38 View
J-L J-L Y107 F377 Y107 F377 Hydrophobic Hydrophobic 0.34 View
J-L J-L Y108 T376 Y108 T376 Hydrophobic Hydrophobic 0.27 View
J-L J-L Y108 T376 Y108 T376 Hydrogen Bonds Hydrogen Bonds 0.21 View
J-L J-L R110 F374 R110 F374 Hydrogen Bonds Hydrogen Bonds 0.24 View
J-L J-L E111 S375 E111 S375 Hydrogen Bonds Hydrogen Bonds 0.44 View
J-L J-L R110 A372 R110 A372 Hydrogen Bonds Hydrogen Bonds 0.56 View
J-L J-L Y107 Y369 Y107 Y369 Hydrophobic Hydrophobic 0.25 View
J-L J-L Y107 Y369 Y107 Y369 Hydrophobic Hydrophobic 0.3 View
J-L J-L Y108 K378 Y108 K378 Hydrophobic Hydrophobic 0.44 View
J-L J-L Y108 V407 Y108 V407 Hydrophobic Hydrophobic 0.28 View
J-L J-L Y107 F377 Y107 F377 Hydrogen Bonds Hydrogen Bonds 0.37 View
J-L J-L Y108 T376 Y108 T376 Hydrophobic Hydrophobic 0.27 View
J-L J-L Y107 Y369 Y107 Y369 Hydrophobic Hydrophobic 0.32 View
J-L J-L D103 K378 D103 K378 Attractive Attractive 0.77 View
J-L J-L Y101 K378 Y101 K378 Hydrophobic Hydrophobic 0.42 View
J-L J-L S105 C379 S105 C379 Hydrogen Bonds Hydrogen Bonds 0.32 View
J-L J-L E111 Y508 E111 Y508 Hydrogen Bonds Hydrogen Bonds 0.34 View
J-L J-L F109 S375 F109 S375 Hydrogen Bonds Hydrogen Bonds 0.26 View
J-L J-L F109 V503 F109 V503 Hydrophobic Hydrophobic 0.49 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7DPM | 7DPM_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7DPM_uk_mut J-L Y107 F374 Hydrogen Bonds 3.73 View
7DPM_uk_mut J-L Y107 F377 Hydrophobic 4.37 View
7DPM_uk_mut J-L Y108 K378 Hydrophobic 4.37 View
7DPM_uk_mut J-L Y108 G404 Hydrogen Bonds 3.88 View
7DPM_uk_mut J-L Y108 R408 Hydrophobic 4.45 View
7DPM_uk_mut J-L Y108 R408 Hydrogen Bonds 3.82 View
7DPM_uk_mut J-L F109 V503 Hydrophobic 4.13 View
7DPM_uk_mut J-L F109 V503 Hydrophobic 4.36 View
7DPM_uk_mut J-L R110 F374 Hydrogen Bonds 3.83 View
7DPM_uk_mut J-L E111 S375 Hydrogen Bonds 3.87 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph