VTR

20 main matches found (55 matches in total )

Execution time: 8.0 seconds

Match RMSD = 0.61

VTR = 0.02

Average AVD = 0.52 Å

Parameters

Chains(7D4G.pdb ): B versus N

Chains(7D4G_uk_mut.pdb ) B versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7D4G 502 37 10 9 0 0 2 58
B7D4G_uk_mut 499 42 10 12 0 0 3 67

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.44 View
B-N B-N Y145 P102 K147 P102 Hydrophobic Hydrophobic 1.95 View
B-N B-N K147 P31 K147 P31 Hydrogen Bonds Hydrogen Bonds 0.81 View
B-N B-N Y248 E32 Y248 E32 Hydrogen Bonds Hydrogen Bonds 0.96 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.55 View
B-N B-N K150 P54 K150 P54 Hydrogen Bonds Hydrogen Bonds 0.34 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.38 View
B-N B-N Y248 Y28 Y248 Y28 Hydrophobic Hydrophobic 0.37 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.51 View
B-N B-N R246 G27 R246 G27 Hydrogen Bonds Hydrogen Bonds 0.38 View
B-N B-N Y248 Y28 Y248 Y28 Hydrophobic Hydrophobic 0.53 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.36 View
B-N B-N Y248 V33 Y248 V33 Hydrophobic Hydrophobic 0.33 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.42 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.42 View
B-N B-N Y145 E32 Y145 E32 Hydrogen Bonds Hydrogen Bonds 1.24 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.56 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.45 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.27 View
B-N B-N K147 E73 K147 E73 Attractive Attractive 0.4 View
B-N B-N Y248 E32 Y248 E32 Hydrogen Bonds Hydrogen Bonds 0.52 View
B-N B-N Y248 P102 Y248 P102 Hydrophobic Hydrophobic 0.5 View
B-N B-N Y248 P102 Y248 P102 Hydrophobic Hydrophobic 0.46 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.46 View
B-N B-N Y145 P102 Y145 P102 Hydrophobic Hydrophobic 0.73 View
B-N B-N K147 P31 K147 P31 Hydrophobic Hydrophobic 0.71 View
B-N B-N Y248 Y28 Y248 Y28 Hydrophobic Hydrophobic 0.52 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.37 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.4 View
B-N B-N Y248 T101 Y248 T101 Hydrophobic Hydrophobic 0.25 View
B-N B-N Y248 V33 Y248 V33 Hydrophobic Hydrophobic 0.42 View
B-N B-N Y144 E32 Y145 E32 Hydrophobic Hydrophobic 1.8 View
B-N B-N Y248 F103 Y248 F103 Aromatic Stacking Aromatic Stacking 0.37 View
B-N B-N Y248 Y28 Y248 Y28 Aromatic Stacking Aromatic Stacking 0.23 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.39 View
B-N B-N Y248 F103 Y248 F103 Hydrophobic Hydrophobic 0.41 View
B-N B-N S247 Y28 S247 Y28 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-N B-N K147 P31 K147 P31 Hydrophobic Hydrophobic 0.64 View
B-N B-N Y248 P102 Y248 P102 Hydrophobic Hydrophobic 0.6 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.4 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.45 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.44 View
B-N B-N K147 V33 K147 V33 Hydrogen Bonds Hydrogen Bonds 0.35 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.44 View
B-N B-N R246 Y28 R246 Y28 Hydrophobic Hydrophobic 0.3 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.49 View
B-N B-N R246 E32 R246 E32 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.52 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.41 View
B-N B-N W152 F103 W152 F103 Hydrophobic Hydrophobic 0.38 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.6 View
B-N B-N Y248 Y28 Y248 Y28 Hydrophobic Hydrophobic 0.58 View
B-N B-N K147 E73 K147 E73 Attractive Attractive 0.29 View
B-N B-N Y248 T101 Y248 T101 Hydrophobic Hydrophobic 0.22 View
B-N B-N R246 E32 R246 E32 Attractive Attractive 0.48 View
B-N B-N R246 Y28 R246 Y28 Hydrophobic Hydrophobic 0.21 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7D4G | 7D4G_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7D4G B-N Y144 T29 Hydrophobic 4.46 View
7D4G B-N Y144 T29 Hydrophobic 4.28 View
7D4G_uk_mut B-N Y145 E32 Hydrophobic 4.42 View
7D4G_uk_mut B-N Y145 P102 Hydrophobic 4.15 View
7D4G_uk_mut B-N Y145 F103 Aromatic Stacking 5.88 View
7D4G_uk_mut B-N R246 G27 Hydrogen Bonds 3.60 View
7D4G_uk_mut B-N R246 Y28 Hydrophobic 4.44 View
7D4G_uk_mut B-N Y248 T101 Hydrophobic 4.45 View
7D4G_uk_mut B-N Y248 T101 Hydrophobic 4.16 View
7D4G_uk_mut B-N Y248 P102 Hydrophobic 4.49 View
7D4G_uk_mut B-N L249 D110 Hydrophobic 4.03 View
7D4G_uk_mut B-N T250 E1 Hydrogen Bonds 3.73 View
7D4G_uk_mut B-N S256 E1 Hydrogen Bonds 3.78 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph