VTR

12 main matches found (25 matches in total )

Execution time: 92.0 seconds

Match RMSD = 0.51

VTR = 0.01

Average AVD = 0.49 Å

Parameters

Chains(7D00.pdb ): A versus H

Chains(7D00_uk_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7D00 3854 13 0 12 0 0 1 26
B7D00_uk_mut 3854 17 0 11 0 0 1 29

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.8 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.42 View
A-H A-H Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-H A-H A475 T28 A475 T28 Hydrophobic Hydrophobic 0.44 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.44 View
A-H A-H N487 F27 N487 F27 Hydrophobic Hydrophobic 0.65 View
A-H A-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.5 View
A-H A-H Y489 T99 Y489 T99 Hydrogen Bonds Hydrogen Bonds 0.24 View
A-H A-H Y421 Y33 Y421 Y33 Hydrogen Bonds Hydrogen Bonds 0.72 View
A-H A-H Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.57 View
A-H A-H L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.76 View
A-H A-H N487 E1 N487 E1 Hydrogen Bonds Hydrogen Bonds 0.28 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.42 View
A-H A-H F456 P53 F456 P53 Hydrophobic Hydrophobic 0.37 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.42 View
A-H A-H K417 Y33 K417 Y33 Hydrophobic Hydrophobic 0.6 View
A-H A-H F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.42 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.47 View
A-H A-H F486 E1 F486 E1 Hydrophobic Hydrophobic 0.6 View
A-H A-H Y489 N32 Y489 N32 Hydrogen Bonds Hydrogen Bonds 0.37 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.38 View
A-H A-H N460 G54 N460 G54 Hydrogen Bonds Hydrogen Bonds 0.61 View
A-H A-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.4 View
A-H A-H D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.43 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7D00 | 7D00_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7D00 A-H Y473 S31 Hydrogen Bonds 3.60 View
7D00_uk_mut A-H K417 Y52 Hydrophobic 4.43 View
7D00_uk_mut A-H K417 Y52 Hydrophobic 3.47 View
7D00_uk_mut A-H K417 Y52 Hydrophobic 4.36 View
7D00_uk_mut A-H N487 F27 Hydrophobic 4.28 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph