VTR

5 main matches found (23 matches in total )

Execution time: 48.0 seconds

Match RMSD = 0.53

VTR = 0.01

Average AVD = 0.48 Å

Parameters

Chains(7CZZ.pdb ): A versus H

Chains(7CZZ_uk_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZZ 4349 18 0 5 0 0 0 23
B7CZZ_uk_mut 4349 22 0 5 0 0 0 27

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H Y489 V101 Y489 V101 Hydrophobic Hydrophobic 0.35 View
A-H A-H F456 V101 F456 V101 Hydrophobic Hydrophobic 0.43 View
A-H A-H Y489 V101 Y489 V101 Hydrophobic Hydrophobic 0.36 View
A-H A-H Q493 T28 Q493 T28 Hydrophobic Hydrophobic 0.48 View
A-H A-H N487 Y99 N487 Y99 Hydrogen Bonds Hydrogen Bonds 0.54 View
A-H A-H F486 M48 F486 M48 Hydrophobic Hydrophobic 0.47 View
A-H A-H F486 M48 F486 M48 Hydrophobic Hydrophobic 0.52 View
A-H A-H Y421 V103 Y421 V103 Hydrophobic Hydrophobic 0.9 View
A-H A-H Y473 V103 Y473 V103 Hydrogen Bonds Hydrogen Bonds 0.69 View
A-H A-H F486 M48 F486 M48 Hydrophobic Hydrophobic 1.3 View
A-H A-H Y489 V101 Y489 V101 Hydrophobic Hydrophobic 0.25 View
A-H A-H Y489 V101 Y489 V101 Hydrophobic Hydrophobic 0.32 View
A-H A-H Y489 Y99 Y489 Y99 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-H A-H F486 M48 F486 M48 Hydrophobic Hydrophobic 0.39 View
A-H A-H F456 V101 F456 V101 Hydrophobic Hydrophobic 0.53 View
A-H A-H F486 M48 F486 M48 Hydrophobic Hydrophobic 0.32 View
A-H A-H F456 V101 F456 V101 Hydrophobic Hydrophobic 0.33 View
A-H A-H Y489 V101 Y489 V101 Hydrophobic Hydrophobic 0.4 View
A-H A-H F486 M48 F486 M48 Hydrophobic Hydrophobic 0.76 View
A-H A-H Q493 T30 Q493 T30 Hydrogen Bonds Hydrogen Bonds 0.26 View
A-H A-H Y489 V101 Y489 V101 Hydrophobic Hydrophobic 0.22 View
A-H A-H F456 V101 F456 V101 Hydrophobic Hydrophobic 0.43 View
A-H A-H Q493 S31 Q493 S31 Hydrogen Bonds Hydrogen Bonds 0.39 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZZ | 7CZZ_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZZ_uk_mut A-H F486 M48 Hydrophobic 4.41 View
7CZZ_uk_mut A-H F486 M48 Hydrophobic 4.32 View
7CZZ_uk_mut A-H F486 M48 Hydrophobic 4.43 View
7CZZ_uk_mut A-H Y489 V101 Hydrophobic 4.18 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph