VTR

12 main matches found (62 matches in total )

Execution time: 50.0 seconds

Match RMSD = 0.54

VTR = 0.0

Average AVD = 0.51 Å

Parameters

Chains(7CZW.pdb ): C versus J

Chains(7CZW_uk_mut.pdb ) C versus J

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZW 3880 50 0 10 0 0 2 62
B7CZW_uk_mut 3880 50 0 10 0 0 2 62

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.29 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.72 View
C-J C-J E484 Y103 E484 Y103 Hydrophobic Hydrophobic 0.41 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.59 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.38 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.51 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.5 View
C-J C-J Y449 A109 Y449 A109 Hydrogen Bonds Hydrogen Bonds 0.92 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.64 View
C-J C-J Q493 Y35 Q493 Y35 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.74 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.29 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.39 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.65 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.48 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.29 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.65 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.46 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.45 View
C-J C-J Y489 Y34 Y489 Y34 Hydrogen Bonds Hydrogen Bonds 0.25 View
C-J C-J G485 Y103 G485 Y103 Hydrogen Bonds Hydrogen Bonds 0.23 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.4 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.49 View
C-J C-J E484 Y103 E484 Y103 Hydrophobic Hydrophobic 0.44 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.39 View
C-J C-J E484 Y103 E484 Y103 Hydrophobic Hydrophobic 0.34 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.47 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.48 View
C-J C-J C488 R101 C488 R101 Hydrogen Bonds Hydrogen Bonds 0.56 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.52 View
C-J C-J E484 Y103 E484 Y103 Hydrophobic Hydrophobic 0.31 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.63 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.77 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.58 View
C-J C-J G485 R101 G485 R101 Hydrogen Bonds Hydrogen Bonds 0.38 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.44 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.42 View
C-J C-J Y505 S56 Y505 S56 Hydrogen Bonds Hydrogen Bonds 1.11 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.83 View
C-J C-J L452 Y104 L452 Y104 Hydrophobic Hydrophobic 0.43 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.35 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.56 View
C-J C-J Q493 Y54 Q493 Y54 Hydrophobic Hydrophobic 0.44 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.69 View
C-J C-J F490 Y104 F490 Y104 Aromatic Stacking Aromatic Stacking 0.32 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.43 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.42 View
C-J C-J K417 Y55 K417 Y55 Hydrogen Bonds Hydrogen Bonds 0.78 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.55 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.58 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.49 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.64 View
C-J C-J F486 W114 F486 W114 Aromatic Stacking Aromatic Stacking 0.39 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.45 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.52 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.39 View
C-J C-J G485 R101 G485 R101 Hydrogen Bonds Hydrogen Bonds 0.38 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.74 View
C-J C-J Y453 Y55 Y453 Y55 Hydrogen Bonds Hydrogen Bonds 0.67 View
C-J C-J Y449 A109 Y449 A109 Hydrophobic Hydrophobic 0.78 View
C-J C-J F486 W114 F486 W114 Hydrophobic Hydrophobic 0.52 View
C-J C-J F490 Y104 F490 Y104 Hydrophobic Hydrophobic 0.29 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZW | 7CZW_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph