VTR

10 main matches found (36 matches in total )

Execution time: 96.0 seconds

Match RMSD = 0.77

VTR = 0.03

Average AVD = 0.73 Å

Parameters

Chains(7CZV.pdb ): A versus H

Chains(7CZV_uk_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZV 4346 26 0 9 0 0 1 36
B7CZV_uk_mut 4346 37 0 10 0 0 1 48

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H F486 Y59 F486 Y59 Hydrophobic Hydrophobic 1.15 View
A-H A-H Y449 Q107 Y449 Q107 Hydrogen Bonds Hydrogen Bonds 0.76 View
A-H A-H Y449 Q107 Y449 Q107 Hydrophobic Hydrophobic 0.85 View
A-H A-H Q493 A102 Q493 A102 Hydrogen Bonds Hydrogen Bonds 0.87 View
A-H A-H F486 Y59 F486 Y59 Aromatic Stacking Aromatic Stacking 0.73 View
A-H A-H S494 V109 S494 V109 Hydrogen Bonds Hydrogen Bonds 0.4 View
A-H A-H Y449 Q107 Y449 Q107 Hydrophobic Hydrophobic 0.77 View
A-H A-H F486 Y59 F486 Y59 Hydrophobic Hydrophobic 1.14 View
A-H A-H L455 I103 L455 I103 Hydrophobic Hydrophobic 0.57 View
A-H A-H Q493 V109 Q493 V109 Hydrophobic Hydrophobic 0.48 View
A-H A-H F486 Y59 F486 Y59 Hydrophobic Hydrophobic 0.94 View
A-H A-H Y449 Q107 Y449 Q107 Hydrophobic Hydrophobic 0.62 View
A-H A-H F456 I103 F456 I103 Hydrophobic Hydrophobic 0.82 View
A-H A-H Y449 Q107 Y449 Q107 Hydrophobic Hydrophobic 0.76 View
A-H A-H Y495 V109 Y495 V109 Hydrophobic Hydrophobic 0.45 View
A-H A-H S494 G108 S494 G108 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-H A-H S494 Q107 S494 Q107 Hydrogen Bonds Hydrogen Bonds 0.63 View
A-H A-H R403 Q101 R403 Q101 Hydrogen Bonds Hydrogen Bonds 1.13 View
A-H A-H G496 V109 G496 V109 Hydrogen Bonds Hydrogen Bonds 0.44 View
A-H A-H L455 I103 L455 I103 Hydrophobic Hydrophobic 0.55 View
A-H A-H F486 Y59 F486 Y59 Hydrophobic Hydrophobic 1.16 View
A-H A-H F486 Y59 F486 Y59 Hydrophobic Hydrophobic 1.08 View
A-H A-H F486 Y59 F486 Y59 Hydrophobic Hydrophobic 1.15 View
A-H A-H Y495 V109 Y495 V109 Hydrophobic Hydrophobic 0.49 View
A-H A-H Y449 Q107 Y449 Q107 Hydrophobic Hydrophobic 0.57 View
A-H A-H L455 I103 L455 I103 Hydrophobic Hydrophobic 0.54 View
A-H A-H Q493 I103 Q493 I103 Hydrogen Bonds Hydrogen Bonds 0.77 View
A-H A-H F456 I103 F456 I103 Hydrophobic Hydrophobic 0.74 View
A-H A-H F486 Y59 F486 Y59 Hydrophobic Hydrophobic 1.06 View
A-H A-H L455 I103 L455 I103 Hydrophobic Hydrophobic 0.36 View
A-H A-H Y449 Q107 Y449 Q107 Hydrophobic Hydrophobic 0.53 View
A-H A-H F456 I103 F456 I103 Hydrophobic Hydrophobic 0.73 View
A-H A-H L455 I103 L455 I103 Hydrophobic Hydrophobic 0.42 View
A-H A-H Y449 Q107 Y449 Q107 Hydrophobic Hydrophobic 0.72 View
A-H A-H Y505 G111 Y505 G111 Hydrogen Bonds Hydrogen Bonds 0.68 View
A-H A-H Y449 Q107 Y449 Q107 Hydrophobic Hydrophobic 0.68 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZV | 7CZV_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZV_uk_mut A-H F486 Y59 Hydrophobic 4.09 View
7CZV_uk_mut A-H F486 Y59 Hydrophobic 3.15 View
7CZV_uk_mut A-H F486 Y59 Hydrophobic 2.94 View
7CZV_uk_mut A-H Y489 I103 Hydrophobic 4.33 View
7CZV_uk_mut A-H Y489 T104 Hydrophobic 4.15 View
7CZV_uk_mut A-H Y489 T104 Hydrophobic 4.40 View
7CZV_uk_mut A-H S494 G108 Hydrogen Bonds 3.87 View
7CZV_uk_mut A-H Y495 V109 Hydrophobic 4.31 View
7CZV_uk_mut A-H Y495 V109 Hydrophobic 4.32 View
7CZV_uk_mut A-H Y501 I110 Hydrophobic 4.05 View
7CZV_uk_mut A-H Y501 I110 Hydrophobic 4.15 View
7CZV_uk_mut A-H Y501 I110 Hydrophobic 4.01 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph