VTR

6 main matches found (15 matches in total )

Execution time: 48.0 seconds

Match RMSD = 0.57

VTR = 0.06

Average AVD = 0.55 Å

Parameters

Chains(7CZT.pdb ): C versus I

Chains(7CZT_uk_mut.pdb ) C versus I

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZT 3872 9 0 3 0 0 3 15
B7CZT_uk_mut 3872 33 0 5 0 0 5 43

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-I C-I Y449 H101 Y449 H101 Aromatic Stacking Aromatic Stacking 0.4 View
C-I C-I Y505 F100 Y505 F100 Hydrophobic Hydrophobic 0.75 View
C-I C-I Y505 F100 Y505 F100 Hydrophobic Hydrophobic 0.74 View
C-I C-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.42 View
C-I C-I Y505 F100 Y505 F100 Aromatic Stacking Aromatic Stacking 0.76 View
C-I C-I Y505 F100 Y505 F100 Hydrophobic Hydrophobic 0.51 View
C-I C-I G496 H101 G496 H101 Hydrogen Bonds Hydrogen Bonds 0.35 View
C-I C-I Y505 F100 Y505 F100 Hydrophobic Hydrophobic 0.65 View
C-I C-I Y505 F100 Y505 F100 Hydrophobic Hydrophobic 0.55 View
C-I C-I Y505 F100 Y505 F100 Hydrophobic Hydrophobic 0.57 View
C-I C-I Y449 Y53 Y449 Y53 Aromatic Stacking Aromatic Stacking 0.39 View
C-I C-I Q498 Y32 Q498 Y32 Hydrogen Bonds Hydrogen Bonds 0.68 View
C-I C-I Y449 Y53 Y449 Y53 Hydrophobic Hydrophobic 0.42 View
C-I C-I S494 H101 S494 H101 Hydrogen Bonds Hydrogen Bonds 0.42 View
C-I C-I Y505 F100 Y505 F100 Hydrophobic Hydrophobic 0.67 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZT | 7CZT_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZT_uk_mut C-I G446 Y53 Hydrogen Bonds 3.88 View
7CZT_uk_mut C-I Y449 W52 Aromatic Stacking 5.57 View
7CZT_uk_mut C-I Y449 W52 Hydrophobic 4.28 View
7CZT_uk_mut C-I Y449 W52 Hydrophobic 3.52 View
7CZT_uk_mut C-I Y449 W52 Hydrogen Bonds 3.72 View
7CZT_uk_mut C-I Y449 Y53 Hydrophobic 4.46 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 4.15 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 3.97 View
7CZT_uk_mut C-I Y501 F100 Aromatic Stacking 4.90 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 4.03 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 3.61 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 4.45 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 3.32 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 4.17 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 3.13 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 4.43 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 3.97 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 4.29 View
7CZT_uk_mut C-I Y501 F100 Hydrophobic 3.62 View
7CZT_uk_mut C-I Y505 F100 Hydrophobic 3.97 View
7CZT_uk_mut C-I Y505 F100 Hydrophobic 4.24 View
7CZT_uk_mut C-I Y505 F100 Hydrophobic 3.71 View
7CZT_uk_mut C-I Y505 F100 Hydrophobic 4.40 View
7CZT_uk_mut C-I Y505 T102 Hydrophobic 3.76 View
7CZT_uk_mut C-I Y505 T102 Hydrophobic 3.41 View
7CZT_uk_mut C-I Y505 T102 Hydrophobic 2.95 View
7CZT_uk_mut C-I Y505 T102 Hydrophobic 4.25 View
7CZT_uk_mut C-I Y505 T102 Hydrophobic 3.49 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph