VTR

3 main matches found (6 matches in total )

Execution time: 47.0 seconds

Match RMSD = 0.8

VTR = 0.07

Average AVD = 0.72 Å

Parameters

Chains(7CZS.pdb ): B versus M

Chains(7CZS_uk_mut.pdb ) B versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZS 4310 3 0 4 0 0 0 7
B7CZS_uk_mut 4310 8 0 7 0 0 0 15

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-M B-M Y505 I29 Y501 I29 Hydrophobic Hydrophobic 0.87 View
B-M B-M Y505 I29 Y505 I29 Hydrophobic Hydrophobic 0.66 View
B-M B-M G502 G28 G502 G28 Hydrogen Bonds Hydrogen Bonds 0.26 View
B-M B-M Y505 I29 Y505 I29 Hydrophobic Hydrophobic 1.24 View
B-M B-M G496 S30 G496 S30 Hydrogen Bonds Hydrogen Bonds 0.34 View
B-M B-M Y505 Q3 Y505 Q3 Hydrogen Bonds Hydrogen Bonds 0.98 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZS | 7CZS_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZS B-M N501 S30 Hydrogen Bonds 3.78 View
7CZS_uk_mut B-M R403 N92 Hydrogen Bonds 2.83 View
7CZS_uk_mut B-M R403 N92 Hydrogen Bonds 3.71 View
7CZS_uk_mut B-M Y501 Q27 Hydrogen Bonds 3.28 View
7CZS_uk_mut B-M Y501 G28 Hydrogen Bonds 3.49 View
7CZS_uk_mut B-M Y501 I29 Hydrophobic 4.46 View
7CZS_uk_mut B-M Y501 I29 Hydrophobic 4.29 View
7CZS_uk_mut B-M Y501 I29 Hydrophobic 3.83 View
7CZS_uk_mut B-M Y501 I29 Hydrophobic 3.65 View
7CZS_uk_mut B-M Y501 I29 Hydrophobic 3.10 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph