VTR

17 main matches found (24 matches in total )

Execution time: 48.0 seconds

Match RMSD = 0.7

VTR = 0.05

Average AVD = 0.66 Å

Parameters

Chains(7CZQ.pdb ): C versus N

Chains(7CZQ_uk_mut.pdb ) C versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZQ 3868 7 1 16 0 1 1 26
B7CZQ_uk_mut 3868 13 1 19 0 2 1 36

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-N C-N E406 N93 E406 N93 Hydrogen Bonds Hydrogen Bonds 0.7 View
C-N C-N G502 D28 G502 D28 Hydrogen Bonds Hydrogen Bonds 0.62 View
C-N C-N Y505 Q90 Y505 Q90 Hydrogen Bonds Hydrogen Bonds 0.61 View
C-N C-N R408 D92 R408 D92 Attractive Attractive 0.35 View
C-N C-N G502 D28 G502 D28 Hydrogen Bonds Hydrogen Bonds 0.52 View
C-N C-N G502 D28 G502 D28 Hydrogen Bonds Hydrogen Bonds 0.68 View
C-N C-N V503 Q27 V503 Q27 Hydrogen Bonds Hydrogen Bonds 0.38 View
C-N C-N Y505 I29 Y505 I29 Hydrophobic Hydrophobic 1.03 View
C-N C-N R403 N93 R403 N93 Hydrogen Bonds Hydrogen Bonds 0.53 View
C-N C-N Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.89 View
C-N C-N Y505 I29 Y501 I29 Hydrophobic Hydrophobic 1.16 View
C-N C-N Y505 Y91 Y505 Y91 Hydrogen Bonds Hydrogen Bonds 0.61 View
C-N C-N Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 1.04 View
C-N C-N E406 N93 E406 N93 Hydrophobic Hydrophobic 0.58 View
C-N C-N R403 Y32 R403 Y32 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-N C-N E406 N93 E406 N93 Hydrogen Bonds Hydrogen Bonds 0.66 View
C-N C-N Y505 D92 Y505 D92 Hydrophobic Hydrophobic 0.69 View
C-N C-N R403 N93 R403 N93 Hydrogen Bonds Hydrogen Bonds 0.47 View
C-N C-N Y505 Y32 Y505 Y32 Aromatic Stacking Aromatic Stacking 0.4 View
C-N C-N D405 D92 D405 D92 Repulsive Repulsive 0.52 View
C-N C-N D405 L94 D405 L94 Hydrogen Bonds Hydrogen Bonds 0.41 View
C-N C-N T500 D28 T500 D28 Hydrogen Bonds Hydrogen Bonds 0.68 View
C-N C-N Y505 I29 Y505 I29 Hydrophobic Hydrophobic 1.3 View
C-N C-N R403 N93 R403 N93 Hydrogen Bonds Hydrogen Bonds 0.59 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZQ | 7CZQ_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZQ C-N N501 S30 Hydrogen Bonds 2.92 View
7CZQ C-N N501 S30 Hydrogen Bonds 3.76 View
7CZQ_uk_mut C-N D405 D92 Repulsive 5.77 View
7CZQ_uk_mut C-N D405 N93 Hydrogen Bonds 3.07 View
7CZQ_uk_mut C-N D405 N93 Hydrogen Bonds 3.48 View
7CZQ_uk_mut C-N Y501 Q27 Hydrogen Bonds 3.42 View
7CZQ_uk_mut C-N Y501 D28 Hydrogen Bonds 3.69 View
7CZQ_uk_mut C-N Y501 D28 Hydrogen Bonds 3.61 View
7CZQ_uk_mut C-N Y501 I29 Hydrophobic 4.23 View
7CZQ_uk_mut C-N Y501 I29 Hydrophobic 3.51 View
7CZQ_uk_mut C-N Y501 I29 Hydrophobic 3.48 View
7CZQ_uk_mut C-N Y505 Y32 Hydrophobic 3.84 View
7CZQ_uk_mut C-N Y505 Y32 Hydrophobic 3.52 View
7CZQ_uk_mut C-N Y505 Y32 Hydrophobic 3.55 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph