VTR

29 main matches found (37 matches in total )

Execution time: 48.0 seconds

Match RMSD = 0.88

VTR = 0.03

Average AVD = 0.8 Å

Parameters

Chains(7CZP.pdb ): C versus J

Chains(7CZP_uk_mut.pdb ) C versus J

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CZP 3862 8 22 4 0 4 0 38
B7CZP_uk_mut 3862 10 22 6 0 7 0 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-J C-J D405 R100 D405 R100 Attractive Attractive 0.96 View
C-J C-J R403 D105 R403 D105 Attractive Attractive 0.74 View
C-J C-J D405 R100 D405 R100 Attractive Attractive 0.68 View
C-J C-J R403 D105 R403 D105 Attractive Attractive 0.85 View
C-J C-J R403 D105 R403 D105 Attractive Attractive 0.62 View
C-J C-J R403 D105 R403 D105 Attractive Attractive 1.11 View
C-J C-J D405 R100 D405 R100 Attractive Attractive 1.43 View
C-J C-J K417 W102 K417 W102 Hydrophobic Hydrophobic 0.44 View
C-J C-J K417 W102 K417 W102 Hydrophobic Hydrophobic 0.44 View
C-J C-J R403 D105 R403 D105 Attractive Attractive 0.72 View
C-J C-J K417 W102 K417 W102 Hydrophobic Hydrophobic 0.4 View
C-J C-J K417 W102 K417 W102 Hydrophobic Hydrophobic 0.46 View
C-J C-J R408 D101 R408 D101 Attractive Attractive 1.35 View
C-J C-J R408 D101 R408 D101 Attractive Attractive 0.89 View
C-J C-J K417 P103 K417 P103 Hydrophobic Hydrophobic 0.36 View
C-J C-J K417 P103 K417 P103 Hydrophobic Hydrophobic 0.17 View
C-J C-J R403 D105 R403 D105 Attractive Attractive 0.84 View
C-J C-J R408 D101 R408 D101 Attractive Attractive 0.86 View
C-J C-J R403 D105 R403 D105 Attractive Attractive 0.99 View
C-J C-J Y505 R100 Y505 R100 Hydrogen Bonds Hydrogen Bonds 1.3 View
C-J C-J R408 D101 R408 D101 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.92 View
C-J C-J D405 R100 D405 R100 Attractive Attractive 1.1 View
C-J C-J K417 D105 K417 D105 Attractive Attractive 1.04 View
C-J C-J R403 R100 R403 R100 Repulsive Repulsive 0.38 View
C-J C-J Y505 R100 Y505 R100 Hydrogen Bonds Hydrogen Bonds 1.11 View
C-J C-J R403 R100 R403 R100 Repulsive Repulsive 0.8 View
C-J C-J R408 D101 R408 D101 Attractive Attractive 1.39 View
C-J C-J Q409 D101 Q409 D101 Hydrogen Bonds Hydrogen Bonds 0.53 View
C-J C-J R403 R100 R403 R100 Repulsive Repulsive 0.66 View
C-J C-J D405 R100 D405 R100 Attractive Attractive 0.83 View
C-J C-J R403 R100 R403 R100 Repulsive Repulsive 0.93 View
C-J C-J K417 W102 K417 W102 Hydrophobic Hydrophobic 0.35 View
C-J C-J D405 R100 D405 R100 Attractive Attractive 1.23 View
C-J C-J D405 R100 D405 R100 Attractive Attractive 0.96 View
C-J C-J R408 D101 R408 D101 Attractive Attractive 0.42 View
C-J C-J R408 D101 R408 D101 Attractive Attractive 1.33 View
C-J C-J K417 P103 K417 P103 Hydrophobic Hydrophobic 0.16 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CZP | 7CZP_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CZP_uk_mut C-J R403 R100 Repulsive 5.85 View
7CZP_uk_mut C-J R403 R100 Repulsive 5.74 View
7CZP_uk_mut C-J R403 R100 Repulsive 5.31 View
7CZP_uk_mut C-J K417 W102 Hydrophobic 4.49 View
7CZP_uk_mut C-J K417 P103 Hydrophobic 4.30 View
7CZP_uk_mut C-J Y505 D105 Hydrogen Bonds 3.76 View
7CZP_uk_mut C-J Y505 D105 Hydrogen Bonds 3.13 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph