VTR

15 main matches found (26 matches in total )

Execution time: 19.0 seconds

Match RMSD = 0.46

VTR = 0.01

Average AVD = 0.45 Å

Parameters

Chains(7CWS.pdb ): R versus G

Chains(7CWS_uk_mut.pdb ) R versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CWS 4602 11 2 9 0 4 0 26
B7CWS_uk_mut 4593 17 2 9 0 4 0 32

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
G-R G-R D102 D405 D102 D405 Repulsive Repulsive 0.5 View
G-R G-R D102 D405 D102 D405 Repulsive Repulsive 0.41 View
G-R G-R Y101 Q414 Y101 Q414 Hydrogen Bonds Hydrogen Bonds 0.53 View
G-R G-R K65 T385 K65 T385 Hydrogen Bonds Hydrogen Bonds 0.68 View
G-R G-R L62 Y369 L62 Y369 Hydrophobic Hydrophobic 0.54 View
G-R G-R P103 Y508 P103 Y508 Hydrophobic Hydrophobic 0.41 View
G-R G-R L62 T385 L62 T385 Hydrophobic Hydrophobic 0.73 View
G-R G-R Y101 R408 Y101 R408 Hydrophobic Hydrophobic 0.51 View
G-R G-R Y101 R408 Y101 R408 Hydrophobic Hydrophobic 0.55 View
G-R G-R D102 R408 D102 R408 Attractive Attractive 0.51 View
G-R G-R Y101 R408 Y101 R408 Hydrophobic Hydrophobic 0.48 View
G-R G-R Y105 T376 Y105 T376 Hydrogen Bonds Hydrogen Bonds 0.24 View
G-R G-R D102 R408 D102 R408 Attractive Attractive 0.5 View
G-R G-R Y50 T376 Y50 T376 Hydrogen Bonds Hydrogen Bonds 0.4 View
G-R G-R Y50 F377 Y50 F377 Hydrogen Bonds Hydrogen Bonds 0.37 View
G-R G-R L62 Y369 L62 Y369 Hydrophobic Hydrophobic 0.51 View
G-R G-R P103 Y508 P103 Y508 Hydrophobic Hydrophobic 0.32 View
G-R G-R S59 F377 S59 F377 Hydrogen Bonds Hydrogen Bonds 0.27 View
G-R G-R Y101 R408 Y101 R408 Hydrophobic Hydrophobic 0.44 View
G-R G-R T58 K378 T58 K378 Hydrogen Bonds Hydrogen Bonds 0.37 View
G-R G-R T69 S383 T69 S383 Hydrogen Bonds Hydrogen Bonds 0.42 View
G-R G-R N55 Y380 N55 Y380 Hydrophobic Hydrophobic 0.35 View
G-R G-R K65 T385 K65 T385 Hydrophobic Hydrophobic 0.35 View
G-R G-R D102 D405 D102 D405 Repulsive Repulsive 0.49 View
G-R G-R D102 D405 D102 D405 Repulsive Repulsive 0.42 View
G-R G-R Y50 F377 Y50 F377 Hydrogen Bonds Hydrogen Bonds 0.41 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CWS | 7CWS_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CWS_uk_mut G-R N55 Y380 Hydrophobic 4.26 View
7CWS_uk_mut G-R L62 Y369 Hydrophobic 4.00 View
7CWS_uk_mut G-R L62 Y369 Hydrophobic 4.46 View
7CWS_uk_mut G-R P103 V503 Hydrophobic 4.44 View
7CWS_uk_mut G-R Y104 V503 Hydrophobic 4.31 View
7CWS_uk_mut G-R Y104 V503 Hydrophobic 4.23 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph