VTR

13 main matches found (33 matches in total )

Execution time: 16.0 seconds

Match RMSD = 0.49

VTR = 0.01

Average AVD = 0.45 Å

Parameters

Chains(7CWM.pdb ): A versus L

Chains(7CWM_uk_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CWM 3883 20 8 3 0 0 2 33
B7CWM_uk_mut 3874 24 8 4 0 0 2 38

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.48 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.81 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.68 View
A-L A-L E484 R96 E484 R96 Attractive Attractive 0.22 View
A-L A-L F486 Y92 F486 Y92 Aromatic Stacking Aromatic Stacking 0.48 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.32 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.17 View
A-L A-L E484 R96 E484 R96 Attractive Attractive 0.4 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.67 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.73 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.74 View
A-L A-L E484 R96 E484 R96 Attractive Attractive 0.51 View
A-L A-L E484 R96 E484 R96 Attractive Attractive 0.22 View
A-L A-L F486 Y32 F486 Y32 Aromatic Stacking Aromatic Stacking 0.39 View
A-L A-L E484 R96 E484 R96 Attractive Attractive 0.43 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.3 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.64 View
A-L A-L E484 R96 E484 R96 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.5 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.22 View
A-L A-L E484 R96 E484 R96 Attractive Attractive 0.32 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.52 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.44 View
A-L A-L E484 R96 E484 R96 Attractive Attractive 0.4 View
A-L A-L E484 R96 E484 R96 Attractive Attractive 0.25 View
A-L A-L E484 R96 E484 R96 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-L A-L F486 Y92 F486 Y92 Hydrogen Bonds Hydrogen Bonds 0.19 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.45 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.35 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.61 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.58 View
A-L A-L F486 Y92 F486 Y92 Hydrophobic Hydrophobic 0.61 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.68 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CWM | 7CWM_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CWM_uk_mut A-L F486 Y92 Hydrophobic 4.38 View
7CWM_uk_mut A-L F486 Y92 Hydrophobic 4.20 View
7CWM_uk_mut A-L F486 Y92 Hydrophobic 4.25 View
7CWM_uk_mut A-L Y489 Y32 Hydrophobic 4.04 View
7CWM_uk_mut A-L Y489 Y32 Hydrogen Bonds 3.32 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph