VTR

18 main matches found (25 matches in total )

Execution time: 27.0 seconds

Match RMSD = 0.51

VTR = 0.01

Average AVD = 0.49 Å

Parameters

Chains(7CHH.pdb ): B versus G

Chains(7CHH_uk_mut.pdb ) B versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CHH 3704 7 9 11 0 2 0 29
B7CHH_uk_mut 3704 8 10 13 0 2 0 33

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-G B-G V483 Y105 V483 Y105 Hydrophobic Hydrophobic 0.52 View
B-G B-G Y449 A28 Y449 A28 Hydrophobic Hydrophobic 0.31 View
B-G B-G E484 R102 E484 R102 Attractive Attractive 0.45 View
B-G B-G E484 R102 E484 R102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.52 View
B-G B-G E484 R102 E484 R102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.51 View
B-G B-G F490 R102 F490 R102 Hydrophobic Hydrophobic 0.25 View
B-G B-G E484 R102 E484 R102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.48 View
B-G B-G F490 R102 F490 R102 Hydrophobic Hydrophobic 0.31 View
B-G B-G E484 R100 E484 R100 Attractive Attractive 0.87 View
B-G B-G N450 T30 N450 T30 Hydrogen Bonds Hydrogen Bonds 0.28 View
B-G B-G R346 K76 R346 K76 Repulsive Repulsive 0.72 View
B-G B-G G482 D106 G482 D106 Hydrogen Bonds Hydrogen Bonds 0.42 View
B-G B-G E484 R100 E484 R100 Hydrogen Bonds Hydrogen Bonds 0.68 View
B-G B-G E484 R102 E484 R102 Attractive Attractive 0.44 View
B-G B-G E484 R102 E484 R102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.47 View
B-G B-G E484 D106 E484 D106 Repulsive Repulsive 0.82 View
B-G B-G G482 Y105 G482 Y105 Hydrogen Bonds Hydrogen Bonds 0.45 View
B-G B-G E484 R102 E484 R102 Attractive Attractive 0.47 View
B-G B-G Y449 G26 Y449 G26 Hydrogen Bonds Hydrogen Bonds 0.39 View
B-G B-G F490 R102 F490 R102 Hydrophobic Hydrophobic 0.44 View
B-G B-G E484 R100 E484 R100 Hydrogen Bonds Hydrogen Bonds 0.63 View
B-G B-G Y449 A28 Y449 A28 Hydrophobic Hydrophobic 0.33 View
B-G B-G G482 L104 G482 L104 Hydrogen Bonds Hydrogen Bonds 0.56 View
B-G B-G F490 T31 F490 T31 Hydrophobic Hydrophobic 0.5 View
B-G B-G E484 R102 E484 R102 Attractive Attractive 0.46 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CHH | 7CHH_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CHH_uk_mut B-G E484 R100 Attractive 5.92 View
7CHH_uk_mut B-G E484 D106 Hydrogen Bonds 3.82 View
7CHH_uk_mut B-G E484 D106 Hydrogen Bonds 3.88 View
7CHH_uk_mut B-G F490 R102 Hydrophobic 4.45 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph