VTR

22 main matches found (32 matches in total )

Execution time: 7.0 seconds

Match RMSD = 0.37

VTR = 0.01

Average AVD = 0.35 Å

Parameters

Chains(7CHC.pdb ): R versus A

Chains(7CHC_uk_mut.pdb ) R versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CHC 1042 10 9 16 0 1 0 36
B7CHC_uk_mut 1042 14 10 17 0 1 0 42

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
R-A R-A L452 T30 L452 T30 Hydrophobic Hydrophobic 0.66 View
R-A R-A E484 R100 E484 R100 Hydrogen Bonds Hydrogen Bonds 0.19 View
R-A R-A E484 R102 E484 R102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.35 View
R-A R-A E484 R102 E484 R102 Attractive Attractive 0.23 View
R-A R-A E484 R102 E484 R102 Attractive Attractive 0.29 View
R-A R-A G482 L104 G482 L104 Hydrogen Bonds Hydrogen Bonds 0.37 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.24 View
R-A R-A E484 R102 E484 R102 Attractive Attractive 0.22 View
R-A R-A N450 S75 N450 S75 Hydrogen Bonds Hydrogen Bonds 0.29 View
R-A R-A R346 S75 R346 S75 Hydrogen Bonds Hydrogen Bonds 0.58 View
R-A R-A E484 R102 E484 R102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.22 View
R-A R-A E484 R102 E484 R102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.28 View
R-A R-A E484 R102 E484 R102 Attractive Attractive 0.3 View
R-A R-A E484 R100 E484 R100 Attractive Attractive 0.16 View
R-A R-A R346 S75 R346 S75 Hydrogen Bonds Hydrogen Bonds 0.43 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.2 View
R-A R-A E484 D106 E484 D106 Repulsive Repulsive 0.36 View
R-A R-A E484 D106 E484 D106 Hydrogen Bonds Hydrogen Bonds 0.27 View
R-A R-A E484 R102 E484 R102 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.29 View
R-A R-A L452 A28 L452 A28 Hydrophobic Hydrophobic 0.36 View
R-A R-A G482 D106 G482 D106 Hydrogen Bonds Hydrogen Bonds 0.27 View
R-A R-A E484 R100 E484 R100 Hydrogen Bonds Hydrogen Bonds 0.26 View
R-A R-A G482 Y105 G482 Y105 Hydrogen Bonds Hydrogen Bonds 0.32 View
R-A R-A L452 T31 L452 T31 Hydrophobic Hydrophobic 0.51 View
R-A R-A N450 N74 N450 N74 Hydrogen Bonds Hydrogen Bonds 0.34 View
R-A R-A V483 Y105 V483 Y105 Hydrophobic Hydrophobic 0.46 View
R-A R-A E484 R102 E484 R102 Hydrogen Bonds Hydrogen Bonds 0.33 View
R-A R-A F490 R102 F490 R102 Hydrophobic Hydrophobic 0.27 View
R-A R-A F490 T31 F490 T31 Hydrophobic Hydrophobic 0.48 View
R-A R-A F490 T31 F490 T31 Hydrophobic Hydrophobic 0.45 View
R-A R-A Y449 G26 Y449 G26 Hydrogen Bonds Hydrogen Bonds 0.59 View
R-A R-A L452 T31 L452 T31 Hydrophobic Hydrophobic 0.43 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CHC | 7CHC_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CHC_uk_mut R-A Y449 A28 Hydrophobic 4.26 View
7CHC_uk_mut R-A Y449 A28 Hydrophobic 4.48 View
7CHC_uk_mut R-A N450 N77 Hydrogen Bonds 3.47 View
7CHC_uk_mut R-A E484 R100 Attractive 5.91 View
7CHC_uk_mut R-A F490 R102 Hydrophobic 4.29 View
7CHC_uk_mut R-A F490 R102 Hydrophobic 4.49 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph