VTR

14 main matches found (19 matches in total )

Execution time: 7.0 seconds

Match RMSD = 0.58

VTR = 0.03

Average AVD = 0.51 Å

Parameters

Chains(7CHB.pdb ): R versus L

Chains(7CHB_uk_mut.pdb ) R versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CHB 614 5 0 15 0 0 0 20
B7CHB_uk_mut 614 11 0 17 0 0 0 28

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-R L-R Q27 V503 Q27 V503 Hydrogen Bonds Hydrogen Bonds 0.65 View
L-R L-R S67 Q498 S67 Q498 Hydrogen Bonds Hydrogen Bonds 0.3 View
L-R L-R N92 R403 N92 R403 Hydrogen Bonds Hydrogen Bonds 0.5 View
L-R L-R Y32 S494 Y32 S494 Hydrogen Bonds Hydrogen Bonds 0.22 View
L-R L-R N92 K417 N92 K417 Hydrogen Bonds Hydrogen Bonds 0.26 View
L-R L-R S93 Y505 S93 Y505 Hydrogen Bonds Hydrogen Bonds 0.83 View
L-R L-R Q90 Y505 Q90 Y505 Hydrogen Bonds Hydrogen Bonds 0.76 View
L-R L-R N92 Y453 N92 Y453 Hydrogen Bonds Hydrogen Bonds 0.22 View
L-R L-R S67 Q498 S67 Q498 Hydrogen Bonds Hydrogen Bonds 0.4 View
L-R L-R N92 R403 N92 R403 Hydrogen Bonds Hydrogen Bonds 0.31 View
L-R L-R G28 G502 G28 G502 Hydrogen Bonds Hydrogen Bonds 1.36 View
L-R L-R I29 Y505 I29 Y505 Hydrophobic Hydrophobic 0.46 View
L-R L-R I29 Y505 I29 Y505 Hydrophobic Hydrophobic 0.57 View
L-R L-R I2 Y505 I2 Y505 Hydrophobic Hydrophobic 0.61 View
L-R L-R Q27 G502 Q27 G502 Hydrogen Bonds Hydrogen Bonds 0.66 View
L-R L-R I2 Y505 I2 Y505 Hydrophobic Hydrophobic 0.47 View
L-R L-R I2 Y505 I2 Y505 Hydrophobic Hydrophobic 0.5 View
L-R L-R Y32 G496 Y32 G496 Hydrogen Bonds Hydrogen Bonds 0.24 View
L-R L-R N92 R403 N92 R403 Hydrogen Bonds Hydrogen Bonds 0.36 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CHB | 7CHB_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CHB L-R S30 N501 Hydrogen Bonds 3.63 View
7CHB_uk_mut L-R I2 Y501 Hydrophobic 3.48 View
7CHB_uk_mut L-R Q27 Y501 Hydrophobic 3.89 View
7CHB_uk_mut L-R Q27 Y501 Hydrophobic 3.08 View
7CHB_uk_mut L-R Q27 Y501 Hydrophobic 4.22 View
7CHB_uk_mut L-R Q27 Y501 Hydrogen Bonds 2.58 View
7CHB_uk_mut L-R Q27 Y501 Hydrogen Bonds 3.27 View
7CHB_uk_mut L-R G28 Y501 Hydrogen Bonds 3.28 View
7CHB_uk_mut L-R I29 Y501 Hydrophobic 4.45 View
7CHB_uk_mut L-R I29 Y501 Hydrophobic 4.24 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph