VTR

31 main matches found (69 matches in total )

Execution time: 6.0 seconds

Match RMSD = 0.51

VTR = 0.01

Average AVD = 0.46 Å

Parameters

Chains(7CAN.pdb ): B versus A

Chains(7CAN_uk_mut.pdb ) B versus A

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CAN 312 38 10 18 0 0 3 69
B7CAN_uk_mut 312 42 11 22 0 0 4 79

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-B A-B E52 F490 E52 F490 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-B A-B R59 E484 R59 E484 Attractive Attractive Hydrogen Bonds 0.32 View
A-B A-B E52 F490 E52 F490 Hydrophobic Hydrophobic 0.24 View
A-B A-B H56 F490 H56 F490 Hydrophobic Hydrophobic 0.3 View
A-B A-B P28 Y449 P28 Y449 Hydrophobic Hydrophobic 0.41 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.38 View
A-B A-B H56 F490 H56 F490 Hydrophobic Hydrophobic 0.29 View
A-B A-B D101 K417 D101 K417 Attractive Attractive 0.88 View
A-B A-B R33 F486 R33 F486 Hydrogen Bonds Hydrogen Bonds 0.42 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.44 View
A-B A-B Y99 L455 Y99 L455 Hydrophobic Hydrophobic 0.64 View
A-B A-B E35 F486 E35 F486 Hydrophobic Hydrophobic 0.25 View
A-B A-B W32 Y449 W32 Y449 Hydrophobic Hydrophobic 0.51 View
A-B A-B H56 F490 H56 F490 Hydrophobic Hydrophobic 0.31 View
A-B A-B R33 C488 R33 C488 Hydrogen Bonds Hydrogen Bonds 0.77 View
A-B A-B Y37 F486 Y37 F486 Hydrophobic Hydrophobic 0.19 View
A-B A-B Y99 F456 Y99 F456 Hydrophobic Hydrophobic 0.51 View
A-B A-B Q103 R403 Q103 R403 Hydrogen Bonds Hydrogen Bonds 1.13 View
A-B A-B Y60 E484 Y60 E484 Hydrogen Bonds Hydrogen Bonds 0.15 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.38 View
A-B A-B R59 E484 R59 E484 Attractive Attractive Hydrogen Bonds 0.78 View
A-B A-B R59 E484 R59 E484 Attractive Attractive 0.8 View
A-B A-B W32 Y449 W32 Y449 Hydrophobic Hydrophobic 0.42 View
A-B A-B D101 K417 D101 K417 Attractive Attractive 0.5 View
A-B A-B Y54 S494 Y54 S494 Hydrogen Bonds Hydrogen Bonds 0.69 View
A-B A-B R59 E484 R59 E484 Attractive Attractive 0.9 View
A-B A-B R33 F486 R33 F486 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-B A-B H56 F490 H56 F490 Hydrophobic Hydrophobic 0.37 View
A-B A-B Y99 L455 Y99 L455 Hydrophobic Hydrophobic 0.57 View
A-B A-B K65 V483 K65 V483 Hydrogen Bonds Hydrogen Bonds 0.57 View
A-B A-B E35 F486 E35 F486 Hydrophobic Hydrophobic 0.23 View
A-B A-B Y37 F486 Y37 F486 Hydrophobic Hydrophobic 0.21 View
A-B A-B D100 Q493 D100 Q493 Hydrogen Bonds Hydrogen Bonds 0.54 View
A-B A-B E52 F490 E52 F490 Hydrogen Bonds Hydrogen Bonds 0.27 View
A-B A-B A50 F486 A50 F486 Hydrophobic Hydrophobic 0.13 View
A-B A-B P28 Y449 P28 Y449 Hydrophobic Hydrophobic 0.41 View
A-B A-B E35 F486 E35 F486 Hydrophobic Hydrophobic 0.22 View
A-B A-B A50 F486 A50 F486 Hydrophobic Hydrophobic 0.15 View
A-B A-B W32 Y449 W32 Y449 Hydrophobic Hydrophobic 0.39 View
A-B A-B Y99 Q493 Y99 Q493 Hydrogen Bonds Hydrogen Bonds 0.39 View
A-B A-B K65 E484 K65 E484 Attractive Attractive 1.13 View
A-B A-B D101 Y453 D101 Y453 Hydrogen Bonds Hydrogen Bonds 0.48 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.45 View
A-B A-B Y37 F486 Y37 F486 Hydrophobic Hydrophobic 0.16 View
A-B A-B Q103 Y453 Q103 Y453 Hydrogen Bonds Hydrogen Bonds 1.0 View
A-B A-B E52 F490 E52 F490 Hydrophobic Hydrophobic 0.25 View
A-B A-B D101 L455 D101 L455 Hydrophobic Hydrophobic 0.52 View
A-B A-B E35 F486 E35 F486 Hydrophobic Hydrophobic 0.24 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.54 View
A-B A-B R59 E484 R59 E484 Attractive Attractive 0.34 View
A-B A-B Y54 Y449 Y54 Y449 Hydrogen Bonds Hydrogen Bonds 0.82 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.45 View
A-B A-B R33 Y489 R33 Y489 Hydrogen Bonds Hydrogen Bonds 0.49 View
A-B A-B Y99 Y489 Y99 Y489 Hydrophobic Hydrophobic 0.21 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.53 View
A-B A-B H56 F490 H56 F490 Aromatic Stacking Aromatic Stacking 0.37 View
A-B A-B R59 C488 R59 C488 Hydrogen Bonds Hydrogen Bonds 0.77 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.54 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.45 View
A-B A-B R59 E484 R59 E484 Attractive Attractive 0.44 View
A-B A-B Y60 F486 Y60 F486 Hydrogen Bonds Hydrogen Bonds 0.14 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.62 View
A-B A-B Y37 F486 Y37 F486 Hydrophobic Hydrophobic 0.2 View
A-B A-B W32 S494 W32 S494 Hydrogen Bonds Hydrogen Bonds 0.53 View
A-B A-B R59 E484 R59 E484 Attractive Attractive 0.51 View
A-B A-B V31 Y449 V31 Y449 Hydrophobic Hydrophobic 0.64 View
A-B A-B Y99 F456 Y99 F456 Hydrophobic Hydrophobic 0.5 View
A-B A-B Y99 Y489 Y99 Y489 Aromatic Stacking Aromatic Stacking 0.18 View
A-B A-B Y37 F486 Y37 F486 Aromatic Stacking Aromatic Stacking 0.18 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CAN | 7CAN_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CAN_uk_mut A-B V31 Y449 Hydrophobic 4.02 View
7CAN_uk_mut A-B V31 Y449 Hydrophobic 3.76 View
7CAN_uk_mut A-B H56 F490 Aromatic Stacking 3.58 View
7CAN_uk_mut A-B R59 E484 Attractive 5.60 View
7CAN_uk_mut A-B Y99 L455 Hydrophobic 4.30 View
7CAN_uk_mut A-B Y99 L455 Hydrophobic 4.47 View
7CAN_uk_mut A-B G102 Y505 Hydrogen Bonds 3.80 View
7CAN_uk_mut A-B Q103 G496 Hydrogen Bonds 3.55 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph