VTR

11 main matches found (31 matches in total )

Execution time: 40.0 seconds

Match RMSD = 0.41

VTR = 0.01

Average AVD = 0.4 Å

Parameters

Chains(7CAI.pdb ): A versus E

Chains(7CAI_uk_mut.pdb ) A versus E

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7CAI 3911 20 2 8 0 1 0 31
B7CAI_uk_mut 3905 25 4 10 0 1 0 40

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-E A-E P412 F54 P412 F54 Hydrophobic Hydrophobic 0.6 View
A-E A-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.27 View
A-E A-E D405 Y104 D405 Y104 Hydrogen Bonds Hydrogen Bonds 0.69 View
A-E A-E Y380 N55 Y380 N55 Hydrophobic Hydrophobic 0.36 View
A-E A-E R408 D102 R408 D102 Attractive Attractive 0.35 View
A-E A-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.43 View
A-E A-E D405 D102 D405 D102 Repulsive Repulsive 0.35 View
A-E A-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.42 View
A-E A-E T376 P103 T376 P103 Hydrophobic Hydrophobic 0.34 View
A-E A-E T376 Y50 T376 Y50 Hydrogen Bonds Hydrogen Bonds 0.51 View
A-E A-E Y380 Y101 Y380 Y101 Hydrogen Bonds Hydrogen Bonds 0.35 View
A-E A-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.39 View
A-E A-E Y380 N55 Y380 N55 Hydrophobic Hydrophobic 0.35 View
A-E A-E V407 P103 V407 P103 Hydrophobic Hydrophobic 0.34 View
A-E A-E P412 F54 P412 F54 Hydrophobic Hydrophobic 0.44 View
A-E A-E K378 G57 K378 G57 Hydrogen Bonds Hydrogen Bonds 0.2 View
A-E A-E T385 D60 T385 D60 Hydrophobic Hydrophobic 0.38 View
A-E A-E P412 F54 P412 F54 Hydrophobic Hydrophobic 0.35 View
A-E A-E R408 D102 R408 D102 Hydrogen Bonds Hydrogen Bonds 0.17 View
A-E A-E K378 Y33 K378 Y33 Hydrophobic Hydrophobic 0.55 View
A-E A-E P412 F54 P412 F54 Hydrophobic Hydrophobic 0.43 View
A-E A-E Y380 Y101 Y380 Y101 Hydrophobic Hydrophobic 0.47 View
A-E A-E T376 Y105 T376 Y105 Hydrogen Bonds Hydrogen Bonds 0.47 View
A-E A-E A411 Y101 A411 Y101 Hydrophobic Hydrophobic 0.4 View
A-E A-E S383 G56 S383 G56 Hydrogen Bonds Hydrogen Bonds 0.27 View
A-E A-E R408 D102 R408 D102 Attractive Attractive 0.37 View
A-E A-E P412 F54 P412 F54 Hydrophobic Hydrophobic 0.6 View
A-E A-E T376 P103 T376 P103 Hydrophobic Hydrophobic 0.27 View
A-E A-E K378 Y50 K378 Y50 Hydrophobic Hydrophobic 0.45 View
A-E A-E F377 Y50 F377 Y50 Hydrogen Bonds Hydrogen Bonds 0.38 View
A-E A-E Y369 L62 Y369 L62 Hydrophobic Hydrophobic 0.4 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7CAI | 7CAI_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7CAI_uk_mut A-E Y369 L62 Hydrophobic 4.11 View
7CAI_uk_mut A-E Y369 L62 Hydrophobic 4.17 View
7CAI_uk_mut A-E K378 D52 Attractive 5.13 View
7CAI_uk_mut A-E K378 D52 Attractive, Hydrogen Bonds 3.92 View
7CAI_uk_mut A-E Y380 Y101 Hydrophobic 4.40 View
7CAI_uk_mut A-E S383 T58 Hydrogen Bonds 3.69 View
7CAI_uk_mut A-E V407 P103 Hydrophobic 4.26 View
7CAI_uk_mut A-E R408 D102 Hydrophobic 4.44 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph