VTR

7 main matches found (15 matches in total )

Execution time: 14.0 seconds

Match RMSD = 0.58

VTR = 0.04

Average AVD = 0.54 Å

Parameters

Chains(7C01.pdb ): B versus D

Chains(7C01_uk_mut.pdb ) B versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7C01 1256 8 0 5 0 0 2 15
B7C01_uk_mut 1256 15 0 9 0 0 3 27

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-D B-D Y505 Y92 Y505 Y92 Aromatic Stacking Aromatic Stacking 0.43 View
B-D B-D Y495 Y32 Y495 Y32 Hydrogen Bonds Hydrogen Bonds 0.26 View
B-D B-D E406 T94 E406 T94 Hydrophobic Hydrophobic 0.54 View
B-D B-D Y505 Y32 Y505 Y32 Hydrogen Bonds Hydrogen Bonds 0.36 View
B-D B-D Y505 Y92 Y505 Y92 Hydrophobic Hydrophobic 0.65 View
B-D B-D R403 Y92 R403 Y92 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-D B-D R403 Y92 R403 Y92 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-D B-D Y505 Y92 Y505 Y92 Hydrogen Bonds Hydrogen Bonds 0.79 View
B-D B-D Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 1.06 View
B-D B-D Y505 Y92 Y505 Y92 Hydrophobic Hydrophobic 0.56 View
B-D B-D Y505 Y92 Y505 Y92 Hydrophobic Hydrophobic 0.49 View
B-D B-D Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.79 View
B-D B-D Y505 Y92 Y505 Y92 Hydrophobic Hydrophobic 0.67 View
B-D B-D D405 T94 D405 T94 Hydrophobic Hydrophobic 0.47 View
B-D B-D Y505 Y32 Y505 Y32 Aromatic Stacking Aromatic Stacking 0.26 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7C01 | 7C01_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7C01_uk_mut B-D R403 Y92 Hydrogen Bonds 2.79 View
7C01_uk_mut B-D D405 Y92 Hydrogen Bonds 3.66 View
7C01_uk_mut B-D Y501 S28 Hydrogen Bonds 3.08 View
7C01_uk_mut B-D Y501 Y92 Aromatic Stacking 4.88 View
7C01_uk_mut B-D Y501 Y92 Hydrophobic 4.37 View
7C01_uk_mut B-D Y501 Y92 Hydrophobic 4.31 View
7C01_uk_mut B-D Y501 Y92 Hydrophobic 3.57 View
7C01_uk_mut B-D Y501 Y92 Hydrophobic 4.18 View
7C01_uk_mut B-D Y501 Y92 Hydrogen Bonds 2.72 View
7C01_uk_mut B-D Y505 Y32 Hydrophobic 4.15 View
7C01_uk_mut B-D Y505 Y92 Hydrophobic 4.24 View
7C01_uk_mut B-D Y505 Y92 Hydrophobic 3.82 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph