VTR

12 main matches found (29 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.3

VTR = 0.0

Average AVD = 0.29 Å

Parameters

Chains(7BEN.pdb ): C versus G

Chains(7BEN_uk_mut.pdb ) C versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7BEN 2095 17 0 11 0 0 1 29
B7BEN_uk_mut 2095 19 0 12 0 0 1 32

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-G C-G V445 Y111 V445 Y111 Hydrophobic Hydrophobic 0.36 View
C-G C-G K444 Y111 K444 Y111 Hydrogen Bonds Hydrogen Bonds 0.25 View
C-G C-G F490 A105 F490 A105 Hydrophobic Hydrophobic 0.27 View
C-G C-G S494 H109 S494 H109 Hydrogen Bonds Hydrogen Bonds 0.34 View
C-G C-G Y449 N112 Y449 N112 Hydrogen Bonds Hydrogen Bonds 0.26 View
C-G C-G Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.25 View
C-G C-G S494 R107 S494 R107 Hydrogen Bonds Hydrogen Bonds 0.18 View
C-G C-G V445 Y111 V445 Y111 Hydrophobic Hydrophobic 0.41 View
C-G C-G K444 Y110 K444 Y110 Hydrogen Bonds Hydrogen Bonds 0.25 View
C-G C-G Y449 H109 Y449 H109 Hydrophobic Hydrophobic 0.32 View
C-G C-G Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.23 View
C-G C-G Y449 V104 Y449 V104 Hydrophobic Hydrophobic 0.23 View
C-G C-G F490 A105 F490 A105 Hydrophobic Hydrophobic 0.22 View
C-G C-G Y449 V104 Y449 V104 Hydrophobic Hydrophobic 0.25 View
C-G C-G Y495 R107 Y495 R107 Hydrogen Bonds Hydrogen Bonds 0.25 View
C-G C-G L452 V104 L452 V104 Hydrophobic Hydrophobic 0.36 View
C-G C-G Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.37 View
C-G C-G Y495 R107 Y495 R107 Hydrogen Bonds Hydrogen Bonds 0.19 View
C-G C-G Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.36 View
C-G C-G Q493 A105 Q493 A105 Hydrogen Bonds Hydrogen Bonds 0.31 View
C-G C-G Y449 H109 Y449 H109 Aromatic Stacking Aromatic Stacking 0.28 View
C-G C-G K444 N112 K444 N112 Hydrogen Bonds Hydrogen Bonds 0.21 View
C-G C-G Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.36 View
C-G C-G Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.37 View
C-G C-G Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.27 View
C-G C-G N448 H109 N448 H109 Hydrogen Bonds Hydrogen Bonds 0.39 View
C-G C-G G446 Y110 G446 Y110 Hydrogen Bonds Hydrogen Bonds 0.22 View
C-G C-G Y449 V102 Y449 V102 Hydrophobic Hydrophobic 0.35 View
C-G C-G Y449 V104 Y449 V104 Hydrophobic Hydrophobic 0.24 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7BEN | 7BEN_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7BEN_uk_mut C-G V445 Y111 Hydrophobic 4.43 View
7BEN_uk_mut C-G V445 Y111 Hydrophobic 4.43 View
7BEN_uk_mut C-G Y449 H109 Hydrogen Bonds 3.66 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph