VTR

28 main matches found (51 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.43

VTR = 0.0

Average AVD = 0.39 Å

Parameters

Chains(7B3O.pdb ): E versus H

Chains(7B3O_uk_mut.pdb ) E versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7B3O 613 23 4 23 0 0 1 51
B7B3O_uk_mut 613 24 4 25 0 0 1 54

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-H E-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.31 View
E-H E-H F456 V99 F456 V99 Hydrophobic Hydrophobic 0.3 View
E-H E-H L455 A100 L455 A100 Hydrophobic Hydrophobic 0.4 View
E-H E-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.64 View
E-H E-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.27 View
E-H E-H T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.15 View
E-H E-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.34 View
E-H E-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.28 View
E-H E-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.39 View
E-H E-H F456 V99 F456 V99 Hydrophobic Hydrophobic 0.3 View
E-H E-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.47 View
E-H E-H T415 Y58 T415 Y58 Hydrogen Bonds Hydrogen Bonds 0.11 View
E-H E-H L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.47 View
E-H E-H F486 I105 F486 I105 Hydrophobic Hydrophobic 0.38 View
E-H E-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.21 View
E-H E-H N487 R97 N487 R97 Hydrogen Bonds Hydrogen Bonds 0.33 View
E-H E-H K417 Y52 K417 Y52 Hydrogen Bonds Hydrogen Bonds 0.52 View
E-H E-H L455 Y33 L455 Y33 Hydrophobic Hydrophobic 0.3 View
E-H E-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.28 View
E-H E-H Y489 V99 Y489 V99 Hydrophobic Hydrophobic 0.19 View
E-H E-H Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.2 View
E-H E-H G416 Y58 G416 Y58 Hydrogen Bonds Hydrogen Bonds 0.16 View
E-H E-H Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 0.6 View
E-H E-H Y473 S31 Y473 S31 Hydrogen Bonds Hydrogen Bonds 0.43 View
E-H E-H F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.31 View
E-H E-H K417 D101 K417 D101 Attractive Attractive 0.59 View
E-H E-H A475 N32 A475 N32 Hydrogen Bonds Hydrogen Bonds 0.69 View
E-H E-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.37 View
E-H E-H K417 Y52 K417 Y52 Hydrophobic Hydrophobic 0.57 View
E-H E-H Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.38 View
E-H E-H K417 Y33 K417 Y33 Hydrophobic Hydrophobic 0.3 View
E-H E-H D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.28 View
E-H E-H N460 G54 N460 G54 Hydrogen Bonds Hydrogen Bonds 0.47 View
E-H E-H D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.25 View
E-H E-H K458 S53 K458 S53 Hydrogen Bonds Hydrogen Bonds 0.32 View
E-H E-H N487 R97 N487 R97 Hydrogen Bonds Hydrogen Bonds 0.34 View
E-H E-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.48 View
E-H E-H K458 G54 K458 G54 Hydrogen Bonds Hydrogen Bonds 0.31 View
E-H E-H Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.21 View
E-H E-H Y489 V99 Y489 V99 Hydrophobic Hydrophobic 0.32 View
E-H E-H A475 S31 A475 S31 Hydrogen Bonds Hydrogen Bonds 1.19 View
E-H E-H K417 D98 K417 D98 Attractive Attractive 0.61 View
E-H E-H K417 D98 K417 D98 Attractive Attractive 0.72 View
E-H E-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.34 View
E-H E-H F486 I105 F486 I105 Hydrophobic Hydrophobic 0.33 View
E-H E-H K417 D101 K417 D101 Attractive Attractive 0.78 View
E-H E-H L455 Y33 L455 Y33 Hydrophobic Hydrophobic 0.33 View
E-H E-H Y489 V99 Y489 V99 Hydrophobic Hydrophobic 0.29 View
E-H E-H N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.5 View
E-H E-H Y489 V99 Y489 V99 Hydrophobic Hydrophobic 0.23 View
E-H E-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.33 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7B3O | 7B3O_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7B3O_uk_mut E-H K417 Y33 Hydrogen Bonds 3.89 View
7B3O_uk_mut E-H Y421 Y52 Hydrophobic 4.47 View
7B3O_uk_mut E-H A475 T28 Hydrogen Bonds 3.35 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph