VTR

8 main matches found (19 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.98

VTR = 0.03

Average AVD = 0.88 Å

Parameters

Chains(7A5R.pdb ): B versus M

Chains(7A5R_uk_mut.pdb ) B versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7A5R 1358 12 2 6 0 0 0 20
B7A5R_uk_mut 1358 14 4 7 0 0 0 25

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-M B-M T430 Y31 T430 Y31 Hydrophobic Hydrophobic 1.01 View
B-M B-M L390 W56 L390 W56 Hydrophobic Hydrophobic 0.44 View
B-M B-M G381 Y38 G381 Y38 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-M B-M T430 Y31 T430 Y31 Hydrophobic Hydrophobic 0.87 View
B-M B-M R44 S83 R44 S83 Hydrogen Bonds Hydrogen Bonds 1.21 View
B-M B-M T430 I34 T430 I34 Hydrophobic Hydrophobic 1.09 View
B-M B-M K386 E61 K386 E61 Attractive Attractive 0.59 View
B-M B-M S45 G16 S45 G16 Hydrogen Bonds Hydrogen Bonds 1.98 View
B-M B-M T430 S33 T430 S33 Hydrogen Bonds Hydrogen Bonds 0.69 View
B-M B-M V42 R67 V42 R67 Hydrophobic Hydrophobic 0.39 View
B-M B-M V42 Q85 V42 Q85 Hydrophobic Hydrophobic 0.72 View
B-M B-M L390 W56 L390 W56 Hydrophobic Hydrophobic 0.44 View
B-M B-M F429 Y31 F429 Y31 Hydrogen Bonds Hydrogen Bonds 0.88 View
B-M B-M F43 L15 F43 L15 Hydrophobic Hydrophobic 1.81 View
B-M B-M T430 I34 T430 I34 Hydrophobic Hydrophobic 1.3 View
B-M B-M D428 Y31 D428 Y31 Hydrophobic Hydrophobic 0.73 View
B-M B-M F429 Y31 F429 Y31 Hydrogen Bonds Hydrogen Bonds 1.09 View
B-M B-M K386 E61 K386 E61 Attractive Attractive 0.68 View
B-M B-M V42 R67 V42 R67 Hydrophobic Hydrophobic 0.33 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7A5R | 7A5R_uk_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7A5R B-M F43 L15 Hydrophobic 4.06 View
7A5R_uk_mut B-M F43 S83 Hydrogen Bonds 3.87 View
7A5R_uk_mut B-M V47 R18 Hydrophobic 4.41 View
7A5R_uk_mut B-M H49 D66 Attractive 5.54 View
7A5R_uk_mut B-M H49 D66 Attractive 4.93 View
7A5R_uk_mut B-M K386 Y55 Hydrophobic 4.33 View
7A5R_uk_mut B-M D428 Y31 Hydrophobic 4.34 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph